PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00025850-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 17182.7 Da PI: 9.0783

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00025850-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.8	8.2e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+SvLCda+v+++i++s+gk++ey+s WALNUT_00025850-RA 9 KRIENSSNRQVTYSKRRNGIIKKAKEISVLCDAKVSLVILGSSGKMHEYCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.889	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.55E-32	2	86	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.63E-38	2	76	No hit	No description
PRINTS	PR00404	3.5E-28	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.5E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.5E-28	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRNGIIK KAKEISVLCD AKVSLVILGS SGKMHEYCSP 60 STSLVDLLED YHKQSGKIRL WDAKHEEKIL EEENKHLNLI LHQQEIAMGT ISRDVADDYE 120 QRVIRDYNSQ MPFAFRVQPI QPNLQERM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	8e-17	1	60	1	60	MEF2 CHIMERA
6byy_B	8e-17	1	60	1	60	MEF2 CHIMERA
6byy_C	8e-17	1	60	1	60	MEF2 CHIMERA
6byy_D	8e-17	1	60	1	60	MEF2 CHIMERA
6bz1_A	8e-17	1	60	1	60	MEF2 CHIMERA
6bz1_B	8e-17	1	60	1	60	MEF2 CHIMERA
6bz1_C	8e-17	1	60	1	60	MEF2 CHIMERA
6bz1_D	8e-17	1	60	1	60	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018812262.1	2e-98	PREDICTED: floral homeotic protein PMADS 2-like
Swissprot	Q0HA25	7e-55	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A2I4DYN8	4e-97	A0A2I4DYN8_JUGRE; floral homeotic protein PMADS 2-like
STRING	XP_004142638.1	3e-66	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4355	32	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	2e-43	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]