PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024863-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27644.5 Da    PI: 6.6416
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024863-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-293484151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krien+snrqvt+skRrngi+KKA+E+SvLCda+v+++i++s+gk++ey+s
  WALNUT_00024863-RA 34 KRIENSSNRQVTYSKRRNGIIKKAKEISVLCDAKVSLVILGSSGKMHEYCS 84
                        79***********************************************96 PP
2K-box75.41.5e-2596194197
               K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                         y+k+sgk  l++ak+e+l++e++++kke++n+q e+Rhl+Ged++s++  keL  Le++Le++l++iR++K+++l++  ++ +  e+e+++
  WALNUT_00024863-RA  96 YHKQSGKIrLWDAKHENLSNEIDRIKKENDNMQIELRHLKGEDISSMNdAKELVLLEEALENGLSSIRERKMDFLKMAKKNEKILEEENKH 186
                         778888888**************************************868***************************************** PP

               K-box  90 enkaLrkk 97 
                          n  L+++
  WALNUT_00024863-RA 187 LNLILHQQ 194
                         **999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.662686IPR002100Transcription factor, MADS-box
SMARTSM004329.0E-352685IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-3228122IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-272848IPR002100Transcription factor, MADS-box
PfamPF003192.0E-223582IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-274863IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-276384IPR002100Transcription factor, MADS-box
PfamPF014861.7E-18109188IPR002487Transcription factor, K-box
PROSITE profilePS5129714.983110197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MKFSISSSLL PTFHKQGEEE KVSEEEEKGK IEIKRIENSS NRQVTYSKRR NGIIKKAKEI  60
SVLCDAKVSL VILGSSGKMH EYCSPSTSLV DLLEDYHKQS GKIRLWDAKH ENLSNEIDRI  120
KKENDNMQIE LRHLKGEDIS SMNDAKELVL LEEALENGLS SIRERKMDFL KMAKKNEKIL  180
EEENKHLNLI LHQQEIAMGT ISRDVADDYE QRVIRDYNSQ MPFAFRVQPI QPNLQERM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811340.11e-153PREDICTED: floral homeotic protein PMADS 2-like
SwissprotQ0HA251e-113MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A2I4DW211e-151A0A2I4DW21_JUGRE; floral homeotic protein PMADS 2-like
STRINGVIT_18s0001g01760.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]