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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00022774-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 30509.5 Da PI: 9.1527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.1 | 1.2e-19 | 121 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +grW+AeIrdp r +r++lg+++taeeAa +++a+ +++g WALNUT_00022774-RA 121 RYRGVRKRP-WGRWAAEIRDPL----RrARVWLGTYDTAEEAAMVYDKAAIRIRG 170 8********.**********73....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.13E-32 | 120 | 177 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 121 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 121 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 121 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-13 | 121 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-21 | 121 | 177 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.8E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MHNLVKYTEH RNVTNKLVKS LAKQFPVSNA EKPKLVRISV TDADATDSSS GEEEDEKPFR 60 QYRVKRLVYE IRIRDFSHYA AINAKPQNAE LKQRPKQPKE EKSTTPAPAQ AKQQFLQDGK 120 RYRGVRKRPW GRWAAEIRDP LRRARVWLGT YDTAEEAAMV YDKAAIRIRG PNALTNFVKP 180 PVSPPTPKVD TERNTVSTTT PASSTQRAVE ESKEDCLWLD PQMLKDFILL DEMMLPETYS 240 REDLIDISVD LEQDLKWDVD AYFSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-22 | 119 | 177 | 3 | 62 | ATERF1 |
3gcc_A | 5e-22 | 119 | 177 | 3 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811168.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
Refseq | XP_018830490.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF2-like | ||||
TrEMBL | A0A2I4DVJ4 | 0.0 | A0A2I4DVJ4_JUGRE; ethylene-responsive transcription factor CRF2-like | ||||
STRING | EOX95789 | 2e-67 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 1e-35 | cytokinin response factor 4 |