PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022774-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 265aa    MW: 30509.5 Da    PI: 9.1527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022774-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19121170255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr ++ +grW+AeIrdp     r +r++lg+++taeeAa  +++a+ +++g
  WALNUT_00022774-RA 121 RYRGVRKRP-WGRWAAEIRDPL----RrARVWLGTYDTAEEAAMVYDKAAIRIRG 170
                         8********.**********73....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-32120177No hitNo description
Gene3DG3DSA:3.30.730.103.9E-30121178IPR001471AP2/ERF domain
PROSITE profilePS5103224.012121178IPR001471AP2/ERF domain
SMARTSM003801.3E-35121184IPR001471AP2/ERF domain
PfamPF008472.1E-13121170IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21121177IPR016177DNA-binding domain
PRINTSPR003678.8E-11122133IPR001471AP2/ERF domain
PRINTSPR003678.8E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MHNLVKYTEH RNVTNKLVKS LAKQFPVSNA EKPKLVRISV TDADATDSSS GEEEDEKPFR  60
QYRVKRLVYE IRIRDFSHYA AINAKPQNAE LKQRPKQPKE EKSTTPAPAQ AKQQFLQDGK  120
RYRGVRKRPW GRWAAEIRDP LRRARVWLGT YDTAEEAAMV YDKAAIRIRG PNALTNFVKP  180
PVSPPTPKVD TERNTVSTTT PASSTQRAVE ESKEDCLWLD PQMLKDFILL DEMMLPETYS  240
REDLIDISVD LEQDLKWDVD AYFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22119177362ATERF1
3gcc_A5e-22119177362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811168.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
RefseqXP_018830490.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2I4DVJ40.0A0A2I4DVJ4_JUGRE; ethylene-responsive transcription factor CRF2-like
STRINGEOX957892e-67(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-35cytokinin response factor 4