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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020613-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 519aa MW: 59136.3 Da PI: 8.2766 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.6e-18 | 74 | 131 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.....kr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+WvAeIr p ng +r r +lg+f+ta +Aa a+++a+++++g WALNUT_00020613-RA 74 KYRGVRQRT-WGKWVAEIRQPL-NGtyvpsRRgSRLWLGTFDTAVQAALAYDEAARAMYG 131 7*****999.**********84.5569997557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.02E-19 | 74 | 140 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-35 | 74 | 145 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.8E-13 | 74 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.062 | 74 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 74 | 140 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.10E-29 | 74 | 141 | No hit | No description |
PRINTS | PR00367 | 1.1E-9 | 75 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MAHYALKSNY RQRRSRKRRT ECDSIEETLA KWKKLNDELD AGKDGVDVIR KVPAKGSRKG 60 CMRGKGGPEN THFKYRGVRQ RTWGKWVAEI RQPLNGTYVP SRRGSRLWLG TFDTAVQAAL 120 AYDEAARAMY GPLSRLNFPE QIAESVFSDT SKTSPTEFEA SLDNSEVGEV KESMINQLST 180 VSRLNYSEVA DEESNEQQGC SKVCVFEEPM KLNPKRYQYC VFHNVEEKPD FSKDYFPQKV 240 QKLDAHLPSS SSSNRMRVLH LKEKLDCSKD YFPHQLQNLD ADLPGSSNQI QELHLKEKPD 300 CSEDYFPHQL QSPDAYLPGN SNHMRELHLD ADGSCDFGLL EQCGRSYLKG SVNLDSLRPD 360 YDFCLVEEKK FLDSIITFYD PDGTQKSKPD GRNFGTQNMN HISVSCFNSD QTIFHGPLLV 420 PNLGEFYRKS YSYNTQGHEE KQTHPDSSKT KYWSSHKIPD QAIFRTSTSV VNKLENAPNP 480 RNKMTANTIP VPKPICVSKA GNKPIRYTSK ASPTVEMRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-17 | 75 | 142 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 19 | SRKRRT |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018809163.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A-like isoform X1 | ||||
TrEMBL | A0A2I4DPU1 | 0.0 | A0A2I4DPU1_JUGRE; dehydration-responsive element-binding protein 2A-like isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13286 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 7e-40 | ERF family protein |