PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00020269-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92489.5 Da PI: 6.1783 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.8e-18 | 18 | 76 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ WALNUT_00020269-RA 18 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 6789*****************************************************97 PP | |||||||
2 | START | 171 | 7.8e-54 | 167 | 374 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d + W ++++ ++l +i +g g+ WALNUT_00020269-RA 167 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDCPSWFRDCRCLDVLSAIPTGngGT 256 689*******************************************************.9999999999********************** PP EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 ++l++++++a+++l++ Rdf+++Ry+ +l +g++vi+ +S++ + p+ + s+vRae+lpSg+li+p+++g+s +++v+hvdl+++++ WALNUT_00020269-RA 257 IELIYMQTYAPTTLAAaRDFWMLRYTASLDDGSLVICVRSLTTSTGGPSgppNTSFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSV 347 *******************************************9999988999************************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 178 hwllrslvksglaegaktwvatlqrqc 204 +++lr+l++s+ + ++k++ a+l++ + WALNUT_00020269-RA 348 PEVLRPLYESSKILAQKMTIAALRHIR 374 **********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.58 | 13 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-15 | 15 | 81 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-16 | 18 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-16 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.98E-16 | 18 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 70 | 109 | No hit | No description |
PROSITE profile | PS50848 | 26.711 | 157 | 385 | IPR002913 | START domain |
CDD | cd08875 | 8.17E-69 | 161 | 377 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 3.1E-23 | 165 | 371 | IPR023393 | START-like domain |
SMART | SM00234 | 1.8E-51 | 166 | 376 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-51 | 167 | 374 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.69E-38 | 167 | 378 | No hit | No description |
SuperFamily | SSF55961 | 5.63E-6 | 414 | 499 | No hit | No description |
SuperFamily | SSF55961 | 5.63E-6 | 527 | 601 | No hit | No description |
Pfam | PF08670 | 1.3E-49 | 701 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MALSMHKDSA NKHMDTSKYV RYTPEQVEAL ERVYSECPKP SSLRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSH LVYDNGYMRQ 120 QLQSASGTTT DNSCESVVMS GQQQQQQNPT PQHPQRDANN PAGLLAIAEE ALAEFLSKAT 180 GTAVDWVQMI GMKPGPDSIG IVAVSRNCSG VAARACGLVS LEPTKVAEIL KDCPSWFRDC 240 RCLDVLSAIP TGNGGTIELI YMQTYAPTTL AAARDFWMLR YTASLDDGSL VICVRSLTTS 300 TGGPSGPPNT SFVRAEMLPS GYLIRPCEGG GSIIHIVDHV DLDAWSVPEV LRPLYESSKI 360 LAQKMTIAAL RHIRQIAQET SGEIQYGGGR QPAVLRTFSQ RLCRGFNDAV NGFADDGWSL 420 LGSDGVEDVT IMVNSSPSKF LGSQYSTSMF STFGGGVLCA KASMLLQNVP PALLVRFLRE 480 HRSEWADYGV DAYSAACLRA SPFAVPCARP GGFPGSQVIL PLAHTVEHEE FLEVVRLEGH 540 AFSPEDVALA RDMYLLQLCS GVDENAVGAS AQLVFAPIDE SFADDAPLLP SGFRVIPLDP 600 KTDGPAATRT LDLASTLEVG AGGARPASEA DLNSYNLRSV LTIAFQFTFE NHLRDNVAAM 660 ARQYVRSVVG SVQRVAMAIS PSRLSSHAGP KPLPGSPEAL TLAQWICRGY RVHTGGELFQ 720 VDSQAGDAIL KQLWHHSDAI LCCSVKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKIL 780 DEAGRKILCS EFSKIMQQGF AYLPAGLCVS SMGRPLSYEQ AITWKVLDDD DSNHCLAFMF 840 INWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ451560 | 0.0 | KJ451560.1 Betula luminifera class III HD-Zip protein HDZ1 (HDZ1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847862.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A2I4GVE4 | 0.0 | A0A2I4GVE4_JUGRE; homeobox-leucine zipper protein ATHB-14-like isoform X1 | ||||
STRING | VIT_10s0003g04670.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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