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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00016944-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 285aa MW: 32111.3 Da PI: 5.1385 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 66 | 114 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp gk r++lg+f taeeAa+a+++ ++k++g WALNUT_00016944-RA 66 YRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDREARKIRG 114 9*******.**********8...545************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 65 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-22 | 65 | 123 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.538 | 65 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-40 | 65 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-12 | 66 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.38E-34 | 66 | 123 | No hit | No description |
Pfam | PF00847 | 5.2E-12 | 66 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-12 | 88 | 104 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MCGGAMLSNL IPASDLLPNA ELNPFESNMS PVVQDVSSPL KRAQLPSGDV RGEAEKPSKR 60 QRKNLYRGIR QRPWGKWAAE IRDPGKGVRV WLGTFNTAEE AARAYDREAR KIRGKKAKVN 120 FPNEDENEVS YFTTTSQIQN QNHYNPPFVR SVPSFPDHHL RDNADLNNKY SRGSDFGFGH 180 DLNQIGGFSY SGFESVGESN TEPTIVSGNY NTYPSTALVC ANDQEAKAEE EEKEVNKTEE 240 EEREVQKLSE ELTEYENFMK FYQTPYYDGQ SAPPAPQYCS GKRCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 66 | 122 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018817988.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF113-like | ||||
TrEMBL | A0A2I4EF23 | 0.0 | A0A2I4EF23_JUGRE; ethylene-responsive transcription factor ERF113-like | ||||
STRING | EMJ01617 | 6e-83 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-32 | ERF family protein |