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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00015192-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35920.8 Da PI: 4.8204 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.8e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g WALNUT_00015192-RA 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-38 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 75 | 132 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.34E-33 | 76 | 133 | No hit | No description |
Pfam | PF00847 | 6.7E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-12 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MCGGAILANI IPPRRHGQRN NMASDLWPNV KLNTFESKLS LFVHDDSAPL KRRQVPSGGV 60 HEEEKKPAKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR 120 KIRGKKAKVN FPNEDKVDGC YFTTASQNHH NPPFLQSIPS FPRQQPQNNT DLNNSYSKGS 180 DFVFDYDLNQ IEGLGYDGFE AIGEANADPI VGSGDESFGS GSGSGSEEAY TSTALLCAND 240 LEVKATEEEK MVEKPEEEEN EVQKLSEELM AYENFMKFYQ IPYYDGQSAP PAPNQESVVA 300 DLWSFNDEEI LSASETSLAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-21 | 76 | 134 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018824793.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2I4EZG8 | 0.0 | A0A2I4EZG8_JUGRE; ethylene-responsive transcription factor 1-like | ||||
STRING | XP_008235129.1 | 1e-95 | (Prunus mume) | ||||
STRING | EMJ01617 | 2e-95 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 4e-32 | ethylene-responsive element binding protein |