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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00013629-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 40081.4 Da PI: 4.7498 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.3e-20 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp+ r r +lg+++taeeAa +++a+ kl+g WALNUT_00013629-RA 116 KKFRGVRQRP-WGKWAAEIRDPT----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 166 59********.**********84....34*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-33 | 116 | 173 | No hit | No description |
Pfam | PF00847 | 5.1E-13 | 117 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 117 | 174 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.0E-39 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.5E-30 | 117 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.644 | 117 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MEQDQGILCP IKYTEHRNII KKLTKHRQVP DGHRKRQDEP NPPRVVRISV TDPDATDSSS 60 DEDHDFFGRQ RVKRYVEEIN IESGCKNNVV SKPRKRPAGE APACRRPLKV APSNGKKFRG 120 VRQRPWGKWA AEIRDPTRRV RLWLGTYDTA EEAAMVYDNA AIKLRGPDAL TNFVTPPKEK 180 PEINVPSVSS YDSGDESHCH GHSLSSPTSV LQYRTPSSEE VLPTEQHEKQ QEEQVGECKR 240 EIAMEEVFVE CQAETSLPDD SGIGVYLPFD LPYFDDVFNF SEPYLLFDEP ISNDTMMDEF 300 GLLFGENSNN ESLGSSSMMN QSLSQNQNQN QNQNQGDDYF QEILFGSDPL VVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 113 | 173 | 1 | 62 | ATERF1 |
3gcc_A | 1e-21 | 113 | 173 | 1 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847356.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2I4GTY1 | 0.0 | A0A2I4GTY1_JUGRE; ethylene-responsive transcription factor CRF4-like | ||||
STRING | EOY23443 | 1e-113 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-66 | cytokinin response factor 4 |