PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00012698-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Nin-like

Protein Properties

Length: 995aa MW: 109636 Da PI: 4.6846

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00012698-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.5e-29	603	653	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ WALNUT_00012698-RA 603 EKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 653 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.564	592	673	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	606	653	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.17E-22	897	986	No hit	No description
PROSITE profile	PS51745	24.519	900	982	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.3E-26	900	982	No hit	No description
SMART	SM00666	5.8E-27	900	982	IPR000270	PB1 domain
Pfam	PF00564	2.5E-19	901	981	IPR000270	PB1 domain
CDD	cd06407	7.22E-37	901	981	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MCGPEELNSC GLPPKSTGPQ VVEEEEEEEE QEEEEEEAAA EEERVVEALI MDFDDLDGSW 60 PLDQVSSVSD HNDDDKNNNQ YPMSPLYLSC SDQAFSPLWA FLDGNDDASH ATSAPPVCSA 120 LFPGTTIPVA ERPVVNNFDD SRLPFPLMGL TPQENPDGCF VIKERMTLAL RYFKDLTEQN 180 VLAQVWVPVK NGSRYVLTTS GQPFVLDPHS NGLNQYRMVS QTYVFPVDED NNGLLGLPGR 240 VFCQRVPEWT PNVQYYSMLE YPRRNHAQNF NVRGSLALPV FEPSGESCVG VLELILTSAK 300 INYAPEVDKV CKALEICNEG RQNALAEILG ILTVVCETHK LPLAQTWVPC MHRNILAYGG 360 GLKKSCTSFD GSCMAQICMS TPDVALYVVD SQMWRFREAC VQHHLKKGQG VAGRAFLSRS 420 SCFCGNITLF CKTNYPLVHY ARMFGLAGCF AICLRSTHTG DDDYILEFFL PPGITDFYEQ 480 QILLGSLLAT MKQHFQSLKV ASDIELEEEV SVEIVQVSED GVDSRIESIR IPLSTKSTPR 540 PDGLLDMGDM VQDSPKQQLM VHLDDINDKG TDVKNGGGSI NNFSSLDIKE MKNKSQRKRG 600 KTEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL 660 KRVIESVQGA EGTFSLNSLN PSPLPIRSNQ QTSPCFKHSE PHEKNESPTR ITLKSDEQDG 720 MEDLLQGGRT FSPEKLVHDH SRSPPEVGKG SNGSKARSGS CEESAGTPTS HGSCQGGPPV 780 ESTALAKHLY VSSINDQCVK AGGDSPELAY PPTGPPNISA AYSLPDGILM TEPQETFGGM 840 LIEDAGSSKD LRNLCPSVAD AVLDEQAPEF CLPNPPCPNQ SMPTLAPTTP HVTARKEMKN 900 VTIKATYKED IIRFRISLSS GILELKEEVA KRLKLEVGTF DIKYLDDDLE WVLIACDADL 960 QECMDIPRSS GSNIIRLLVQ DTISNLGSSC ESSWD

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MCGPEELNSC GLPPKSTGPQ VVEEEEEEEE QEEEEEEAAA EEERVVEALI MDFDDLDGSW  60
PLDQVSSVSD HNDDDKNNNQ YPMSPLYLSC SDQAFSPLWA FLDGNDDASH ATSAPPVCSA  120
LFPGTTIPVA ERPVVNNFDD SRLPFPLMGL TPQENPDGCF VIKERMTLAL RYFKDLTEQN  180
VLAQVWVPVK NGSRYVLTTS GQPFVLDPHS NGLNQYRMVS QTYVFPVDED NNGLLGLPGR  240
VFCQRVPEWT PNVQYYSMLE YPRRNHAQNF NVRGSLALPV FEPSGESCVG VLELILTSAK  300
INYAPEVDKV CKALEICNEG RQNALAEILG ILTVVCETHK LPLAQTWVPC MHRNILAYGG  360
GLKKSCTSFD GSCMAQICMS TPDVALYVVD SQMWRFREAC VQHHLKKGQG VAGRAFLSRS  420
SCFCGNITLF CKTNYPLVHY ARMFGLAGCF AICLRSTHTG DDDYILEFFL PPGITDFYEQ  480
QILLGSLLAT MKQHFQSLKV ASDIELEEEV SVEIVQVSED GVDSRIESIR IPLSTKSTPR  540
PDGLLDMGDM VQDSPKQQLM VHLDDINDKG TDVKNGGGSI NNFSSLDIKE MKNKSQRKRG  600
KTEKSISLEV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL  660
KRVIESVQGA EGTFSLNSLN PSPLPIRSNQ QTSPCFKHSE PHEKNESPTR ITLKSDEQDG  720
MEDLLQGGRT FSPEKLVHDH SRSPPEVGKG SNGSKARSGS CEESAGTPTS HGSCQGGPPV  780
ESTALAKHLY VSSINDQCVK AGGDSPELAY PPTGPPNISA AYSLPDGILM TEPQETFGGM  840
LIEDAGSSKD LRNLCPSVAD AVLDEQAPEF CLPNPPCPNQ SMPTLAPTTP HVTARKEMKN  900
VTIKATYKED IIRFRISLSS GILELKEEVA KRLKLEVGTF DIKYLDDDLE WVLIACDADL  960
QECMDIPRSS GSNIIRLLVQ DTISNLGSSC ESSWD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018824315.1	0.0	PREDICTED: protein NLP6-like
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2I4EY38	0.0	A0A2I4EY38_JUGRE; protein NLP6-like
STRING	EOY25090	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]