PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011821-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 362aa    MW: 40907.6 Da    PI: 7.656
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011821-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.6e-1288144155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  s+n  +r k  + g ++ +e Aa+a++ a++k++g
  WALNUT_00011821-RA  88 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 144
                         789******************88887786625555.********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-888144IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1488154IPR016177DNA-binding domain
CDDcd000183.49E-1788154No hitNo description
SMARTSM003802.6E-1789158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-1289153IPR001471AP2/ERF domain
PROSITE profilePS5103218.04489152IPR001471AP2/ERF domain
PRINTSPR003672.5E-590101IPR001471AP2/ERF domain
PROSITE profilePS510329.229170229IPR001471AP2/ERF domain
SMARTSM003801.8E-4184235IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-5200231IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-6204230IPR001471AP2/ERF domain
PRINTSPR003672.5E-5211231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEMVNVKLSD LSRPGFHDHL CMNMEGRRDD ALATSNKCVK RRRRNSSAPA LSCSNILGDQ  60
QQKQPQAVAD ESTTTTTTTT STGVKKSSRF RGVSRHRWTG RFEAHLWDKG SWNPTQRKKG  120
KQGAYDEEES AARAYDLAAL KYWGTSTFTN FPVSDYEREI EIMRTVTREE YLASLRRRSS  180
GFSRGVSKYR GVARIFHLMV YVGTQEEAAH AYDIAAIEYR GINAVTNFDL STYIRWLRPS  240
SNSLASQEPK PSIESQHNMS ANPVPSMGMT EQSIFHFNTS TVDALEMNTL LQKEEVFQSE  300
DPISPSSYSS SPTALGLLLR SSLFKELMER NLNAIDKESE ENDTNFPRYA GIDNGVGENF  360
WL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121PTQRKKGKQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296456e-48KP229645.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF22) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819078.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6PQQ31e-60AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2I4EI490.0A0A2I4EI49_JUGRE; AP2-like ethylene-responsive transcription factor At1g16060
STRINGEMJ275231e-134(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-50AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]