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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00009629-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 386aa MW: 42804.6 Da PI: 6.1459 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.8e-21 | 185 | 235 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+ge WALNUT_00009629-RA 185 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 235 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.61E-34 | 184 | 244 | No hit | No description |
PROSITE profile | PS51032 | 23.235 | 185 | 242 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-38 | 185 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-23 | 185 | 243 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-32 | 185 | 243 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-14 | 186 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 186 | 197 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 208 | 224 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAAAMDIYNS SSTSFFSDPL GEELMKALVP FMKSASSTSS ITTSSPPSPS TSSPSSSLSF 60 ASYPSYSFST IFPSHPNLYP DFCSPSSTHM FSEGFSSHNQ MDHEQAGTIG LNHLTPSQIL 120 QIQAQIQLQQ QQQQRQQQIA AMASASLQNQ RLSHWQQQNT HALDFLSPKT IPMKHVGTPS 180 KPAKLYRGVR QRHWGKWVAE IRLPKNRTRL WLGTFDTAEE AALAYDKAAY KLRGEFARLN 240 FPHLKHQGAH ISGEFGDYKP LHSSVDAKLQ AICQNLVNSQ KQVKTEEPCF VPDVKPVISA 300 ALGESSVFDE SQRTELRREH GVFGSEEFKV ENSSLSPALS DESSSFVGSS SPESDITFLD 360 FSDSQDETEN FPLEKFPSVE IDWAAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-22 | 184 | 242 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018850809.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4-like | ||||
TrEMBL | A0A2I4H3U7 | 0.0 | A0A2I4H3U7_JUGRE; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | POPTR_0005s07900.1 | 1e-144 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-56 | related to AP2 4 |