PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005202-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 343aa    MW: 38235.6 Da    PI: 6.4111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005202-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-20196246255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ kl+g
  WALNUT_00005202-RA 196 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDRAAFKLRG 246
                         7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-32195255IPR001471AP2/ERF domain
PROSITE profilePS5103224.25196254IPR001471AP2/ERF domain
PfamPF008471.9E-14196246IPR001471AP2/ERF domain
SMARTSM003806.9E-38196260IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23196255IPR016177DNA-binding domain
CDDcd000183.85E-31196254No hitNo description
PRINTSPR003671.3E-13197208IPR001471AP2/ERF domain
PRINTSPR003671.3E-13236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MANSCEEVSS ALKLIKLHLL GEVSPVGTLS NNFEIDVLGS ESRSQSDSLC SQASSSDSIM  60
EFANFFSSND PFDFTFHQGP SDFFEFEAKP HIVDLTMPKS HDATSQSSND FFQLEAKPQI  120
IEVAAPNTRT STSYSQSNSN CFEIESRPQM NRPKPSLTIS LPSKGTTEWI QFGQPTRQSD  180
RSLAVQENAS SEARRHYRGV RQRPWGKYAA EIRDPNRRGS RVWLGTFDTA IEAAKAYDRA  240
AFKLRGSKAI LNFPLEAGKS ETAPATRERK RRHEEEKKEV VVVKKERCTE TSDTGTSYLG  300
EIPLTPSSWT AVWDSELQGA FNIPPLSPLS PHPQFGYPQL MVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-29195261470ATERF1
3gcc_A5e-29195261470ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824977.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A2I4F0000.0A0A2I4F000_JUGRE; ethylene-responsive transcription factor 5-like
STRINGXP_010104815.13e-87(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-61ethylene responsive element binding factor 5