![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00003691-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 34470.4 Da PI: 4.9964 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.7 | 4.5e-21 | 163 | 213 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + + r++lg+f+ta eAaka+++a+ kl+g WALNUT_00003691-RA 163 HYRGVRRRP-WGKYAAEIRDP---NrRGSRVWLGTFDTAIEAAKAYDQAAFKLRG 213 8********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.76E-31 | 162 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 162 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-23 | 163 | 222 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.553 | 163 | 221 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-37 | 163 | 227 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-15 | 163 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 164 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-13 | 203 | 223 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 309 aa Download sequence Send to blast |
MATSYEDVSS ALQFIKLHLL GEVSPVPLPC LSNSDNEISS FESCSQTSGS MPVSDFFSYN 60 DLFEFPKIMD LTASISLDSN NDFFESESKP NSHTSTSYSP QSIGNCFAFE SRPQTNRTKP 120 SLMISLPIKS TTKLLQSGDH NQQPDPSSVP SVVQNASFEE EKHYRGVRRR PWGKYAAEIR 180 DPNRRGSRVW LGTFDTAIEA AKAYDQAAFK LRGSKAILNF PLEAGKSETM KKVDGRKRYR 240 VEEEEEEEVV LKKERSMETE DTASTSSSRN IPLTPSNWTA VLDGDLEGIF NVPPLSPHPP 300 FGYSQLMVI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-30 | 162 | 228 | 4 | 70 | ATERF1 |
3gcc_A | 7e-30 | 162 | 228 | 4 | 70 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018839490.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF105-like | ||||
TrEMBL | A0A2I4G6H9 | 0.0 | A0A2I4G6H9_JUGRE; ethylene-responsive transcription factor ERF105-like | ||||
STRING | evm.model.supercontig_89.42 | 8e-70 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 4e-67 | ethylene responsive element binding factor 5 |