PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g11880.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 665aa    MW: 72058.8 Da    PI: 6.3088
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g11880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.34.8e-25286336152
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                      kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQ 
  Vradi11g11880.1 286 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQG 336
                      79*******************.*****************************6 PP
2Response_reg74.73.5e-251042121109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++++q+  + +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + + ++ 
  Vradi11g11880.1 104 VLVVDDDATTLRIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKGIRH 195
                      89*********************.*******************************************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  Vradi11g11880.1 196 GACDYLIKPVREEELRN 212
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.8E-39101233No hitNo description
SuperFamilySSF521721.31E-33101225IPR011006CheY-like superfamily
SMARTSM004484.9E-29102214IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.387103218IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-21104213IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.13E-25105217No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25283336IPR009057Homeodomain-like
PROSITE profilePS512949.799283342IPR017930Myb domain
SuperFamilySSF466893.94E-16283340IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-21286336IPR006447Myb domain, plants
PfamPF002494.9E-7288338IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDTITALAGT MLLVGSGELH GRFLCSQITL LALKQPNEGV GDDAFKIRVS ILLLCSLSAI  60
VLRFSASELS PDHVVALVAL MAQSRSAGDA CKGGTAEFPA GLRVLVVDDD ATTLRIIEQM  120
SIRCRYRVTT CTEATVALNL LRERKGCFDV VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM  180
SGDSTTSAVM KGIRHGACDY LIKPVREEEL RNIWQHVVRK IWNENKEHDN SGSMEDSDWN  240
KRGNDDTEYT SSVADAAEVV KAPKKRSSLK EEDIELESDD PATSKKPRVV WSVELHQQFV  300
SAVNQLGLDK AVPKRILELM NVPGLTRENV ASHLQGWLMR LPVVNEKFRL YLKRLSGVAQ  360
QQNGMLNAVP GTIESKLSAT GRFDIQALAA AGHVPPETLA ALHAELLGRP ATSIMSTADQ  420
ATLLQASIGL KHSHAEHAVA YGQPFVKCPS NIGKDFPPSF LTANDVSSGY GAWPSSNNTM  480
GSAVNGSASV NQNCSFGMNA IIDYSLLSQK SNNSVSASQF SGGDTKTQAV LYAHTTPSTC  540
SMSSINGSIP QLQNSTLTFG GARPLPSPLP MSDRQDPYGL KSGDSFDQVC LRNIGFIGKG  600
TCIPNRFVQN EIESSVSDFS QMKVNVDSTG NTLKEEPNFI NMQKVSRPIF GRYQSCDHSS  660
VFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19285356464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g11880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643111.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-141ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-141ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A3Q0FHC80.0A0A3Q0FHC8_VIGRR; Two-component response regulator
STRINGGLYMA02G09451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-112response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]