PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g03890.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 593aa    MW: 66649.5 Da    PI: 6.953
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g03890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.61.3e-07256313155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++     +++ +I    ++ + ++ k+f +g ++ +e+Aa+a++ a++k++g
  Vradi11g03890.1 256 SQYRGVTRSVLLSSFLNHITKeEKQFKqVNsKNFIVGGYDMEEKAARAYDMAALKYWG 313
                      6788888888888888888885555667667*************************98 PP
2AP245.81.5e-14358407355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi11g03890.1 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407
                      9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-9257322IPR001471AP2/ERF domain
PROSITE profilePS5103213.182257321IPR001471AP2/ERF domain
PfamPF008476.0E-5257313IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-9257323IPR016177DNA-binding domain
SMARTSM003805.4E-5257327IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-17356416IPR016177DNA-binding domain
CDDcd000189.87E-25356417No hitNo description
Gene3DG3DSA:3.30.730.104.6E-18357415IPR001471AP2/ERF domain
SMARTSM003801.2E-33357421IPR001471AP2/ERF domain
PROSITE profilePS5103219.177357415IPR001471AP2/ERF domain
PfamPF008472.5E-9358407IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MKPVENRETV DINYQNSCLG FSLSPQMNIT GAAAETVPPT YYHHTPLHNY GLLGEHVGMF  60
SSLPIMPLKS NVSFYGIEAI SRSQPQEMAT TSAIPLSLDS MFYNQLSCHG SNDPNNENHV  120
QENISKQQLP YYSSLRNNHD VILEGSKQQL PCIAEDEVAC LKSWFSRDFP ACQAQESRMF  180
VPLEDNGSKS GPNIGSITYE DLHSLNLSVS PTRRSSCVTG SPAINDTKKR GLEMVDQNQK  240
KIVHRKSIDT FGQRTSQYRG VTRSVLLSSF LNHITKEEKQ FKQVNSKNFI VGGYDMEEKA  300
ARAYDMAALK YWGPSSHINF PLENYQNELE EMKNMTRQEY VAHLRRKSSG FSRGASMYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFDITRYD  420
VEKIMASDNL LSSEQAKRSR EKEDGTRNEA FSNQNPCVYE HNKETIVMQK SCKMVPYPPH  480
QQLDQNPPRI ESCRTHSFST ALNNIFHQEV EESSNMGTHL SNPSSLVTSL SSSREESPDK  540
TSLPMLFGMP STVSKLFTNI PTSDGDSWEL SSNLRPALSL PQMPIFASWT DA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g03890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520084.10.0AP2-like ethylene-responsive transcription factor ANT isoform X4
SwissprotQ84Z021e-119CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1S3VPU30.0A0A1S3VPU3_VIGRR; AP2-like ethylene-responsive transcription factor ANT isoform X4
STRINGXP_007156691.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-109AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]