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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g04070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 26512 Da PI: 4.7681 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.8 | 8.4e-32 | 78 | 136 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+geHnh+ Vradi09g04070.1 78 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNKSDPTMFVVTYTGEHNHP 136 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-31 | 66 | 138 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.393 | 72 | 138 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-27 | 74 | 138 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.7E-38 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 79 | 136 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEPDWDLHAL VRSCTTTSSP AAAATTTVST TSSGFGASAP PSTSRSFFSV YNPAVQEGQI 60 VKNQVKKVCD VAAENLSSDI WAWRKYGQKP IKGSPYPRGY YRCSSSKGCL ARKQVERNKS 120 DPTMFVVTYT GEHNHPAPTH KSSLAGSTRY KPQIGGDTAT TRPVSPATSS EVAQHSTKSE 180 CTEEELEDLM KDDDEEANEF DLTESVVSDD FFEGLEELTE SPFTASSIID RWSLTNNATT 240 AAGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 6e-23 | 63 | 139 | 3 | 80 | Disease resistance protein RRS1 |
5w3x_D | 6e-23 | 63 | 139 | 3 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g04070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516136.1 | 1e-133 | WRKY transcription factor 22 | ||||
Swissprot | O04609 | 5e-66 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A1S3VCQ0 | 1e-132 | A0A1S3VCQ0_VIGRR; WRKY transcription factor 22 | ||||
STRING | XP_007135139.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 2e-61 | WRKY family protein |