PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g15430.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 189aa    MW: 21328.2 Da    PI: 10.9158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g15430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28e-133273547
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++eEd  l  +v+ +G+++W++I+ ++  gR++k+c++rw + 
  Vradi06g15430.1 32 SAEEDRVLTGLVEAHGPKNWALISLHVK-GRSGKSCRLRWCNQ 73
                     68*************************9.***********985 PP
2Myb_DNA-binding50.93.5e-1682122345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++Tt Ed ++++a+ +lG++ W++Iar+++ gRt++ +k++w+
  Vradi06g15430.1  82 PFTTREDAIILHAHDRLGNK-WAAIARMLP-GRTDNAVKNHWN 122
                      89******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.8352374IPR017930Myb domain
SMARTSM007172.4E-82776IPR001005SANT/Myb domain
SuperFamilySSF466895.39E-2732121IPR009057Homeodomain-like
PfamPF002493.8E-123273IPR001005SANT/Myb domain
CDDcd001671.11E-103272No hitNo description
Gene3DG3DSA:1.10.10.603.7E-203281IPR009057Homeodomain-like
PROSITE profilePS5129421.78675129IPR017930Myb domain
SMARTSM007172.0E-1379127IPR001005SANT/Myb domain
CDDcd001672.69E-1082125No hitNo description
PfamPF002497.9E-1482122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2182129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAQFLQRLQN SKHNQKPVQI DKLEQLHAET RSAEEDRVLT GLVEAHGPKN WALISLHVKG  60
RSGKSCRLRW CNQLSPTVEH RPFTTREDAI ILHAHDRLGN KWAAIARMLP GRTDNAVKNH  120
WNATLKRRVS QRRRFGDDPL TALTLAPPGS GGRGWTAGFR DVVAKEVREY VSFSFSDNLG  180
SNEKLSKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-37321298105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-363212962159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-363212962159MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-37321298105C-Myb DNA-Binding Domain
1msf_C7e-37321298105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g15430.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504223.11e-114transcription factor MYB44-like
SwissprotO231607e-44MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1S3UDW91e-113A0A1S3UDW9_VIGRR; transcription factor MYB44-like
STRINGGLYMA17G36370.25e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.16e-47myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]