PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g22670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 78aa MW: 8663.67 Da PI: 8.4834 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.5e-11 | 28 | 69 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E+ l+++ k+ G++ W++Ia +++ gRt+ ++ +w Vradi05g22670.1 28 VEFSEDEETLIIRMYKLVGKR-WSLIAGRIP-GRTADEIEKYWT 69 679******************.*********.***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.276 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 7.3E-10 | 26 | 74 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.62E-10 | 27 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-10 | 28 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-15 | 29 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.84E-8 | 29 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0010063 | Biological Process | positive regulation of trichoblast fate specification | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:1900033 | Biological Process | negative regulation of trichome patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MADSNTSSTQ TSDDRICLDS GKRGSSKVEF SEDEETLIIR MYKLVGKRWS LIAGRIPGRT 60 ADEIEKYWTS RLSSSSK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. | |||||
UniProt | Transcription factor. Determines the fate of epidermal cell differentiation. Represses trichome development by lateral inhibition. Together with GL3 or BHLH2, promotes the formation of hair developing cells (H position) in root epidermis, probably by inhibiting non-hair cell formation. Represses the expression of GL2 and WER in H cells. Positively regulates stomatal formation in the hypocotyl (PubMed:19513241). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:12356720, ECO:0000269|PubMed:16291794, ECO:0000269|PubMed:19513241, ECO:0000269|PubMed:9262483}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g22670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional repression correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in root epidermis N cells (non-hair developing cells). Induced by WER. Negative autoregulation by interfering with the binding of WER to its WER-binding sites (WBS) promoter region, especially in H cells. Down-regulated by GEM. Down-regulated by TMM (PubMed:19513241). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16176989, ECO:0000269|PubMed:16207757, ECO:0000269|PubMed:17450124, ECO:0000269|PubMed:19513241}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238114 | 1e-76 | KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592819.1 | 1e-34 | MYB-like transcription factor ETC1 | ||||
Refseq | XP_028193891.1 | 1e-34 | MYB-like transcription factor ETC1 | ||||
Swissprot | O22059 | 3e-16 | CPC_ARATH; Transcription factor CPC | ||||
Swissprot | Q9LNI5 | 3e-16 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0L9UN91 | 3e-38 | A0A0L9UN91_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G32130.3 | 5e-34 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2692 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46410.1 | 3e-18 | MYB_related family protein |