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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g10030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 200aa MW: 22305.1 Da PI: 9.7472 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 129.8 | 2.7e-40 | 21 | 125 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+ +++s+ + ++ + Vradi04g10030.1 21 TAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfSSSSDDVDGGV---Prdddfn 111 78**************************************************************66655333222222222221...1222444 PP TCP 89 .............k 89 + Vradi04g10030.1 112 vieesivikrklkH 125 44455554444431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.6E-38 | 21 | 120 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.401 | 23 | 81 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLNQDLGGAL YGITKKPAKK TAKKDRHSKI HTSQGLRDRR VRLSIEIARK FFDLQDMLGF 60 DKASNTLDWL FTKSKKAIKE LTRSKHSADS FEFSSSSDDV DGGVPRDDDF NVIEESIVIK 120 RKLKHSLMSS IHHQNAVIPK EATVNNSDYH SFPNLSPNWE ANNAANGRSN FCAIASMNLS 180 AGLQIFGKSW EECTNPHPT* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g10030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-159 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497254.1 | 1e-68 | transcription factor DICHOTOMA-like isoform X1 | ||||
TrEMBL | A0A1S3TU29 | 2e-67 | A0A1S3TU29_VIGRR; transcription factor DICHOTOMA-like isoform X1 | ||||
STRING | XP_007139331.1 | 1e-63 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 8e-28 | TCP family protein |