PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi03g03680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 37009.3 Da PI: 7.2835 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.8e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++q+G+g +W + ++++g++R++k+c++rw++yl Vradi03g03680.1 14 KGPWSPEEDAKLKDYIEQHGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd+++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Vradi03g03680.1 69 GQFSVEEDKIICSLFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.188 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.71E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.13E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.5 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.78E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE QHGTGGNWIA LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGQ FSVEEDKIIC SLFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMTAM 120 NPSPQKKPLQ ITLLSILESS TPSSSSLSFR DNSSNNNSYY HPHGSFTGVG SFSYSSCLLS 180 GNSSSASADS FFQAQESFMD PTQKGQFKDS SSNSMLVFGG EATATSCSSS DASCNNQIRQ 240 IMESEFGEAS FVEQICVADN PLYIGVENTT NKLMMFSSGG SASVSGWTDK QNGLWEQNPL 300 DYGIEEIKQL ISTNNSFNNF LFDDKKTEER VTYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi03g03680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014495439.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | A0A1S3TNV6 | 0.0 | A0A1S3TNV6_VIGRR; transcription factor RAX2-like | ||||
STRING | XP_007162775.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-76 | myb domain protein 36 |