PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0335s00020.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 525aa    MW: 58166.5 Da    PI: 6.5857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0335s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30303360258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                        +Dg++WrKYGqK+ kg+++pr+YYrC++  gCpv+k+v+rsaed++v+++tYeg+Hnh
  Vradi0335s00020.1 303 SDGCQWRKYGQKMAKGNPCPRAYYRCSMGtGCPVRKQVQRSAEDQSVLITTYEGQHNH 360
                        7***************************98**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-32287362IPR003657WRKY domain
PROSITE profilePS5081129.379297363IPR003657WRKY domain
SuperFamilySSF1182901.18E-26299363IPR003657WRKY domain
SMARTSM007741.3E-36302362IPR003657WRKY domain
PfamPF031067.9E-27304360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
LPSPLHLIIS DFNLSESNPS LSLFTHLPFS IHSQNYIGLI QPLSFYLLLH LHIMEEATSN  60
DDSDLPPLTH SILFHAKTLV TDEMDFFADN NNKNKNNTNV FPDDHEMLHQ MELHVDTSLD  120
LLTKTSPTNR STVGEGSSEA RPNERDNKFA AMLAELHHMN AENQRLRDEV DKVNDKYHAL  180
HNQLIKQMEK QRKNEGKKAD MIPRPFLDIG VAMKEESSQQ YSKGKLQESK NMMDLIESKK  240
QKIYTNKDVT ELETSEKAIP RWLSNEVSRS SSFKDVDEAS ETMSMIKKAR VSVRARSVSS  300
MISDGCQWRK YGQKMAKGNP CPRAYYRCSM GTGCPVRKQV QRSAEDQSVL ITTYEGQHNH  360
VLPPAAKPMA STTSAAASML LSGSMPSSDG LLHPNILESA TLPFSHNLAT LSASAPFPTI  420
TLDLTQTQTP TNNINTSSQQ DLPQDYQLSL LSPLLAPNFF HQSKLSTLHA SQGTETASFA  480
DTVNAATAAI TTDPKFSAAL MAAITSIIGS SHPVETQHCN NKQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-24289365176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0335s00020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014521858.10.0probable WRKY transcription factor 31
TrEMBLA0A1S3VU000.0A0A1S3VU00_VIGRR; probable WRKY transcription factor 31
STRINGXP_007146514.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139131222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-65WRKY family protein