PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi02g07100.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 635aa MW: 69831.7 Da PI: 6.8702

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g07100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	329	387	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ Vradi02g07100.1 329 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLNTTYEGNHNHP 387 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-33	313	389	IPR003657	WRKY domain
SuperFamily	SSF118290	4.58E-27	321	389	IPR003657	WRKY domain
PROSITE profile	PS50811	29.046	323	389	IPR003657	WRKY domain
SMART	SM00774	5.0E-36	328	388	IPR003657	WRKY domain
Pfam	PF03106	2.7E-26	330	387	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MVRGCGLSMD SDPIGSFFLH KPIVLNSFPE DTNHPKWKLT PHNNMDTIPF QVNLSCSPNN 60 HHSPPPPLHN TTEMDFFSDN TNHNVSASAS ASASNHHHST TPPTLEFKLN TGLNLLTTNT 120 SSDQSMVDDE ISPNSEDRRA ENKLAVLQAE LERMKRENQK LRDTLHQVNV NYDALQMHFM 180 NLMQQKGEEV EEQEVIGGKS EEKKQGESGG VLVPRQFMDL GLATNADTDE PSSSSGGRSQ 240 DRSGSPNAEV ASKELGTSMN ENVNDEGCDK EKKEYGRGVE SEDSPSGHAF AGDKVPRFSP 300 QKSNVEHAEA TMRKARVSVR ARSEAPMITD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC 360 PVRKQVQRCA EDRTVLNTTY EGNHNHPLPP AAMAMAQTTS SAARMLLSGS MSSADSIMNA 420 NLLTRALLPC SSSIATISAS APFPTVTLDL TQSPNPLQFP RHPNQLQIPL QGIPQNFSNS 480 PASLMPQIFG QALYNQSKFS GLQMSHDADP SQFGNHPQQA EIDCYASKFE TNHLRPIVGI 540 ESQIELNRVK GQDESLRVES RNKSSLSEGQ DGSSKRLKFK TNCLDPKFIM GHHNPKVETS 600 HLGPAETNGR DGRPRPKVKT DRPRHNVETT WAEG*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MVRGCGLSMD SDPIGSFFLH KPIVLNSFPE DTNHPKWKLT PHNNMDTIPF QVNLSCSPNN  60
HHSPPPPLHN TTEMDFFSDN TNHNVSASAS ASASNHHHST TPPTLEFKLN TGLNLLTTNT  120
SSDQSMVDDE ISPNSEDRRA ENKLAVLQAE LERMKRENQK LRDTLHQVNV NYDALQMHFM  180
NLMQQKGEEV EEQEVIGGKS EEKKQGESGG VLVPRQFMDL GLATNADTDE PSSSSGGRSQ  240
DRSGSPNAEV ASKELGTSMN ENVNDEGCDK EKKEYGRGVE SEDSPSGHAF AGDKVPRFSP  300
QKSNVEHAEA TMRKARVSVR ARSEAPMITD GCQWRKYGQK MAKGNPCPRA YYRCTMAAGC  360
PVRKQVQRCA EDRTVLNTTY EGNHNHPLPP AAMAMAQTTS SAARMLLSGS MSSADSIMNA  420
NLLTRALLPC SSSIATISAS APFPTVTLDL TQSPNPLQFP RHPNQLQIPL QGIPQNFSNS  480
PASLMPQIFG QALYNQSKFS GLQMSHDADP SQFGNHPQQA EIDCYASKFE TNHLRPIVGI  540
ESQIELNRVK GQDESLRVES RNKSSLSEGQ DGSSKRLKFK TNCLDPKFIM GHHNPKVETS  600
HLGPAETNGR DGRPRPKVKT DRPRHNVETT WAEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-20	319	389	8	77	Probable WRKY transcription factor 4
2ayd_A	4e-20	315	391	1	76	WRKY transcription factor 1
2lex_A	5e-20	319	389	8	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g07100.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493591.1	0.0	probable WRKY transcription factor 31
Swissprot	Q9C519	1e-117	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A1S3TIL0	0.0	A0A1S3TIL0_VIGRR; probable WRKY transcription factor 31
STRING	XP_007132527.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF866	34	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-100	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]