PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

ERF

Protein Properties

Length: 288aa MW: 32098.3 Da PI: 6.9153

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi02g06710.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.6	4.8e-16	41	91	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +rWv+eIr+p++ + r+++g++ ++e+Aa+a++ a ++l+g Vradi02g06710.1 41 PVYRGVRQRN-GNRWVCEIREPVK---KSRIWVGTYSSPEMAARAHDVAVLALNG 91 68***999.9*****654...5*******************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.0E-11	41	91	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-19	42	101	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	5.1E-27	42	101	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.284	42	99	IPR001471	AP2/ERF domain
SMART	SM00380	8.9E-24	42	105	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-6	43	54	IPR001471	AP2/ERF domain
CDD	cd00018	5.97E-26	43	101	No hit	No description
PRINTS	PR00367	2.8E-6	65	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.70.900	8.7E-32	182	282	No hit	No description
SuperFamily	SSF54909	1.54E-27	183	279	IPR011008	Dimeric alpha-beta barrel
SMART	SM00886	2.3E-22	186	280	IPR013097	Stress responsive alpha-beta barrel
PROSITE profile	PS51502	27.549	186	278	IPR013097	Stress responsive alpha-beta barrel
Pfam	PF07876	4.1E-22	187	279	IPR013097	Stress responsive alpha-beta barrel

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MINMNMKNKE SPCSISQSPS NPNPSHKRKA GRKKFRETRH PVYRGVRQRN GNRWVCEIRE 60 PVKKSRIWVG TYSSPEMAAR AHDVAVLALN GISAKFNFPD SVSLLPLAKS SSAADIREAA 120 KAATVHDTFT PNSSFSCSSH GNSSFEDSLF NTSMHDDESE TVFFDEEALY NMPGLLDSMA 180 EAMGSFNHYV IVKFKDGVEV EELIQGLEKM VSGIDQVKSF EWGKDIESHE MLRQGFTHVF 240 LMAFNGKEEF NAFQTHPNHV EFSGVFSPAI EKIVVLDFPS KLVKAPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rjj_A	3e-37	182	285	2	105	expressed protein
1rjj_B	3e-37	182	285	2	105	expressed protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi02g06710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-168	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523454.2	1e-126	dehydration-responsive element-binding protein 1F-like
Swissprot	A2WZI4	6e-47	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	6e-47	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	A0A1S3VZI1	1e-124	A0A1S3VZI1_VIGRR; dehydration-responsive element-binding protein 1F-like
STRING	XP_007132398.1	9e-94	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	3e-43	C-repeat/DRE binding factor 2

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]