PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0273s00180.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 980aa MW: 108078 Da PI: 5.6998

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0273s00180.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	73.5	3.7e-23	155	203	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsr Vradi0273s00180.1 155 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRL 203 6**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-23	149	203	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	17.187	153	228	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-21	154	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-16	156	203	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.44E-8	747	865	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.0E-6	751	867	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.84E-7	753	864	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MEARFGAEAY HFFGVGASSD LRGMGKRSSE WDLNDWRWDG DLFIASRLNP VPVDGVGVGQ 60 QFFPLGSGIP VVGGPSNSSS CSEEVDPRDP KGNKEGDKKR RVIVLEDDGL NEEAGTLSLK 120 LGGHASGVVD REVASWDGMN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM 180 HSKASRALVG NAMQRFCQQC SRLPVALADA LEGCPKALLF LLVTTSTFTD RSNQTTDQDL 240 LTHILRSLAS QNGEQAGKNI SNLLQEPENL LREGGSSRKS EMVSTLFSNG SQGSPTVTRQ 300 HEAVSMAKLQ QQVTHAHDAR ASDQQITSSI KPSMSNSPPA YSEARDSTAG QIKMNNFDLN 360 DIYIDSDDGM EDLERLPVST NLVTSSLDYP WAQQDSHQSS PPQTSGNSDS ASAQSPSSSS 420 GEAQSRTDRI VFKLFGKEPN DFPLVLRAQI LDWLSHSPTD MESYIRPGCI VLTIYLRQAE 480 ALWEELCYDL TSSLNRLLDV ADDTFWRNGW VHIRAQHQMA FIFNGQVLID TSLPFRSNNY 540 SKILTVSPIA VPASERAQFS VKGVNLIRPA TRLMCALEGK YLVCEDTQMS MDQCSNEPDE 600 LQCVQFSCSV PVMNGRGFIE IEDQGLSSSF FPFIVVEEDV CSEICTLEPL LEISETDPDI 660 EGTGKVKAKN QAMDFIHEMG WLLHRSRLKL RMVHLNSTVD PFQLKRFKWL IEFSMDHDWC 720 AAVKKLLNLL FDGTVNAGDH PSLYLALSDM GLLHKAVRRN SKQLVELLLR YVPENISDEL 780 GPEVKALVDG ENKTFLFRPD VVGPAGLTPL HIAAGKDGSE DVLDALTNDP CMVGIEAWKN 840 ARDSTGSTPE DYARLRGHYA YIHLVQKKIN KRHGAAHVVV EIPNNTTESN TNQKQNETST 900 SFEIGKPAVR LSQGHCKLCD SKISCRTAVG RSLVYRPAML SMVAIAAVCV CVALLFKSSP 960 EVICMFRPFR WETLDFGTS*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MEARFGAEAY HFFGVGASSD LRGMGKRSSE WDLNDWRWDG DLFIASRLNP VPVDGVGVGQ  60
QFFPLGSGIP VVGGPSNSSS CSEEVDPRDP KGNKEGDKKR RVIVLEDDGL NEEAGTLSLK  120
LGGHASGVVD REVASWDGMN GKKSRVSGST SNRAVCQVED CSADLSKAKD YHRRHKVCEM  180
HSKASRALVG NAMQRFCQQC SRLPVALADA LEGCPKALLF LLVTTSTFTD RSNQTTDQDL  240
LTHILRSLAS QNGEQAGKNI SNLLQEPENL LREGGSSRKS EMVSTLFSNG SQGSPTVTRQ  300
HEAVSMAKLQ QQVTHAHDAR ASDQQITSSI KPSMSNSPPA YSEARDSTAG QIKMNNFDLN  360
DIYIDSDDGM EDLERLPVST NLVTSSLDYP WAQQDSHQSS PPQTSGNSDS ASAQSPSSSS  420
GEAQSRTDRI VFKLFGKEPN DFPLVLRAQI LDWLSHSPTD MESYIRPGCI VLTIYLRQAE  480
ALWEELCYDL TSSLNRLLDV ADDTFWRNGW VHIRAQHQMA FIFNGQVLID TSLPFRSNNY  540
SKILTVSPIA VPASERAQFS VKGVNLIRPA TRLMCALEGK YLVCEDTQMS MDQCSNEPDE  600
LQCVQFSCSV PVMNGRGFIE IEDQGLSSSF FPFIVVEEDV CSEICTLEPL LEISETDPDI  660
EGTGKVKAKN QAMDFIHEMG WLLHRSRLKL RMVHLNSTVD PFQLKRFKWL IEFSMDHDWC  720
AAVKKLLNLL FDGTVNAGDH PSLYLALSDM GLLHKAVRRN SKQLVELLLR YVPENISDEL  780
GPEVKALVDG ENKTFLFRPD VVGPAGLTPL HIAAGKDGSE DVLDALTNDP CMVGIEAWKN  840
ARDSTGSTPE DYARLRGHYA YIHLVQKKIN KRHGAAHVVV EIPNNTTESN TNQKQNETST  900
SFEIGKPAVR LSQGHCKLCD SKISCRTAVG RSLVYRPAML SMVAIAAVCV CVALLFKSSP  960
EVICMFRPFR WETLDFGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	5e-22	156	205	6	55	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0273s00180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492405.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_014492406.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_022633791.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0L9TY71	0.0	A0A0L9TY71_PHAAN; Uncharacterized protein
STRING	XP_007145109.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]