PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g11520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 278aa    MW: 30420.7 Da    PI: 8.3252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g11520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29120178259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK  k++++pr+YYrCt+a gCpv+k+v+r++ed++++++tYeg+Hnh+
  Vradi01g11520.1 120 YDGCQWRKYGQKISKDNPCPRAYYRCTMAlGCPVRKQVQRCTEDKSMLITTYEGNHNHP 178
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081127.611114180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-30114180IPR003657WRKY domain
SuperFamilySSF1182901.44E-26117180IPR003657WRKY domain
SMARTSM007744.8E-35119179IPR003657WRKY domain
PfamPF031065.0E-26121178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MRGCVFGYVK PYPIFKAVVV FGYHACGRWH PCNLHGYGAI LTMVELQRWT TVDDSTLEGV  60
SWKPEGGGRS DREISVVVDD APTTKVFVTM EDVVRGGGQC SAHHMEVDGG IVTVMKDKIY  120
DGCQWRKYGQ KISKDNPCPR AYYRCTMALG CPVRKQVQRC TEDKSMLITT YEGNHNHPFP  180
PPSATETSSF PLHATTFPRL PGHPIIFPHK LQHSLGQKQP SFMTDIMTAA VASNPNFIVA  240
LAATISSIIG APRSNDGNNI YNNNGGNVQT SMLPGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191171811275WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g11520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-109AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414241.15e-79PREDICTED: probable WRKY transcription factor 47 isoform X1
RefseqXP_017414242.14e-79PREDICTED: probable WRKY transcription factor 47 isoform X2
TrEMBLA0A0S3SQW21e-77A0A0S3SQW2_PHAAN; Uncharacterized protein
STRINGGLYMA10G27860.24e-65(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.14e-37WRKY family protein