PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi0190s00280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARR-B
Protein Properties Length: 286aa    MW: 32345.3 Da    PI: 6.0005
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi0190s00280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like26.71.3e-08188209122
            G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                        kpr+ W+ eLH++Fv++v+qLG
  Vradi0190s00280.1 188 KPRVMWSVELHQQFVNVVNQLG 209
                        79*******************6 PP
2Response_reg55.82.7e-192911425109
                        EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++ + ++ +++ + ++ Ga d+l Kp+ +eel++
  Vradi0190s00280.1  29 KVNTCTKATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMFGDSTTSLVMKGIRHGACDYLIKPVREEELRN 114
                        899****************************************6644.8************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011028.3151120IPR001789Signal transduction response regulator, receiver domain
SMARTSM004481.2E-611116IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.44E-1827124No hitNo description
SuperFamilySSF521721.02E-2327125IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-2827129No hitNo description
PfamPF000721.2E-1529115IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.606.8E-8185211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLLLSSIPWV AFRSRRMQGW HDGVPGGAKV NTCTKATVAL NLLRERKGCF DVVLSDVHMP  60
DMDGYKLLEH VGLEMDLPVI MMFGDSTTSL VMKGIRHGAC DYLIKPVREE ELRNIWQHAV  120
RKILNEDKEH DNSGSMEDSD WNKRGNDDIE YTSFVADAAE VVKAPKKRSS LKEEDIELES  180
DDPATSKKPR VMWSVELHQQ FVNVVNQLGL DMELLVPEGF MVSFECPVGT YKNVTGSDKA  240
FCHDCPPHEL PYRAIYILFE VFLIISLFSS HLNGRIKAKL FKCVL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi0190s00280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427857.11e-118PREDICTED: two-component response regulator ORR21-like
SwissprotA2XE312e-71ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A0L9UU341e-117A0A0L9UU34_PHAAN; Two-component response regulator
TrEMBLA0A0S3T1W21e-117A0A0S3T1W2_PHAAN; Two-component response regulator
STRINGXP_007153220.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-59response regulator 2