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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi0146s00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 236aa MW: 24764.9 Da PI: 7.8453 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127 | 2e-39 | 27 | 109 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s ++ Vradi0146s00050.1 27 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaAAGNSVSPQG 109 789******************************************************************88853333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.2E-32 | 32 | 118 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MGENKPGEMK DFQIVVSEKD ESKKQLAPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL 60 TRELGHKSDG ETIQWLLQQA EPSIIAATGT GTIPASALAA AGNSVSPQGA SLSSGLHHKI 120 DELGGSNMGS GSSRTSWQMV GGNLGRPHVA TGLWPPHVSG FGFQTSSGPS NAALGTESSN 180 YLQKIAFPGF DLPAAATNMG HMSFTSILGA AVLESPDTGA SISGMELHDQ MDWLL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi0146s00050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014523867.1 | 1e-153 | transcription factor TCP20 | ||||
Refseq | XP_014523868.1 | 1e-153 | transcription factor TCP20 | ||||
Refseq | XP_017419443.1 | 1e-153 | PREDICTED: transcription factor TCP20 | ||||
Refseq | XP_017419444.1 | 1e-153 | PREDICTED: transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 7e-65 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A0L9U6J0 | 1e-152 | A0A0L9U6J0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RVY5 | 1e-152 | A0A0S3RVY5_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VZQ5 | 1e-152 | A0A1S3VZQ5_VIGRR; transcription factor TCP20 | ||||
STRING | XP_007161676.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 3e-67 | TCP family protein |