PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0037s0149.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | C3H | ||||||||
Protein Properties | Length: 1247aa MW: 126935 Da PI: 7.097 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.4 | 1.6e-10 | 1153 | 1178 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + lC+f+ +tG+Ck+G++C F H++ Vocar.0037s0149.1.p 1153 GKQLCDFYVKTGHCKFGESCVFDHPE 1178 678*********************96 PP | |||||||
2 | zf-CCCH | 29.5 | 1.3e-09 | 1195 | 1219 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C f++++ +C++G+ CkF+H+p Vocar.0037s0149.1.p 1195 EQICTFYLKNNECRFGPACKFHHPP 1219 679********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.200.20 | 1.5E-15 | 445 | 618 | No hit | No description |
SuperFamily | SSF56112 | 2.05E-54 | 500 | 775 | IPR011009 | Protein kinase-like domain |
SMART | SM00220 | 2.1E-41 | 506 | 772 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 36.796 | 506 | 772 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 8.1E-38 | 511 | 770 | IPR000719 | Protein kinase domain |
Gene3D | G3DSA:1.10.510.10 | 5.2E-38 | 619 | 773 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 628 | 640 | IPR008271 | Serine/threonine-protein kinase, active site |
PROSITE profile | PS51392 | 33.692 | 775 | 947 | IPR010513 | KEN domain |
CDD | cd10422 | 5.06E-49 | 777 | 944 | No hit | No description |
Pfam | PF06479 | 4.7E-27 | 842 | 944 | IPR010513 | KEN domain |
SMART | SM00580 | 1.1E-14 | 878 | 932 | IPR018997 | PUB domain |
PROSITE profile | PS50103 | 14.971 | 1151 | 1179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.3E-6 | 1151 | 1178 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-8 | 1153 | 1178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 1154 | 1178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 1155 | 1177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 1192 | 1219 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-5 | 1192 | 1218 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 1192 | 1220 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-7 | 1195 | 1219 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 1196 | 1218 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0006987 | Biological Process | activation of signaling protein activity involved in unfolded protein response | ||||
GO:0008380 | Biological Process | RNA splicing | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0046777 | Biological Process | protein autophosphorylation | ||||
GO:0042406 | Cellular Component | extrinsic component of endoplasmic reticulum membrane | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1247 aa Download sequence Send to blast |
MEAWNATYSR IINLRPGASG GASGIPGGGG GGGPACGRGT RAAGGVLPLF TVGADHTLQA 60 YDPASRLRRW ALRFKTPPVG VFAEEHGDTN FLDPATVHPL LDLDPEPPAA AGAPTDARRR 120 RHHHHRGGGS GGGGSDSTGG GGDAADGARN LVLVGELKGS LYAMPAERVV LDERVESQPQ 180 PWDAIALPGP GSDYHSIKPL PLLPSTADAA VAPAVVPAAA EKAVVVHSGG ASSKDLVAYA 240 RDAETGEGVV SGLACRPPGL QILATVGEPT GVRQPWLPDA PKPGGGLRLP AAGNSSGGSG 300 AGAAAATGAF VLGVEAGSGM LTVVLLATAG VGAAAVLVVL QFRGGKTAAA GLNGKGSAAS 360 AAIDVAAAAA AAAVAGGAAA GEANIPAAAA AAMKSGGGGG PGGSRGAGSG RGRRKGRGGE 420 GGSSSSGGGG GGDGSSFRSS DTHLSSIPEN QQLPSGTEGP PSPSARPTFS PSPRGPPGAV 480 AAPHLPSAEP RVRLRGDGSL AIGRLVVGPG ILGYGSAGTV VYEGVLDGRP VAVKRLLRQF 540 TELARKEIEV LILSDEHPNV VRCFALEEDR EFVYLALEKC RSTLSDFLDT PAGRNQFVDP 600 DTKQPTARCL STLLDVCRGL AALHERGIVH RDLKPHNVLL TESGQRAKLS DMGLSKQLVP 660 EQSSFESHHG PGGSSGWQAP EQLIARDGGA ARQTRSMDVF SLGCILYYCM TGGRHPFGDN 720 HYERDARILR ADPVLGPLCT AGPEAFNLVS SCLAREPASR PAVGAVLGHP LWWGDDRRLG 780 FLVDISDRVE NEDREPDTSL LAAMESYAAV ALAGPGMEAL EGAGIFASSS SSPPSSNTPG 840 LTAALTAALA ASCLPNWGAS LPPELVGNLG RYRRYDFTSL RDLLRVVRNK RNHFREMPPA 900 LQSMLGPLPG GFLRFFCGRF PHLLLAVYVF AVRHLANEPT LQQYWGDGGG GEGAEPFVRT 960 FMAMYGNRMK PTKTQQQPQQ QQQQQSPAGG ASTQGLVSEP QAAQAVVGAA TIVITATATA 1020 TGTGGGEEAK IPVAPPPTAV AATSSSSVSS SAAVPVPTPS SDIDGSSSSS SPPSPPTTGP 1080 HGGDGTPFAA TNATATTNNT ANNGSSSSGS GDPQLPAFPP PPPQPPPPLV LVGYEPSGDD 1140 GAVMVREFPR RPGKQLCDFY VKTGHCKFGE SCVFDHPELY AVRLTALGLP LRPEEQICTF 1200 YLKNNECRFG PACKFHHPPL RPVYAGSLAV GVAEGAGGGA AGGGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3fbv_B | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_C | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_D | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_E | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_F | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_G | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_H | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_I | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_J | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_K | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_L | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_M | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3fbv_N | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_A | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_B | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_C | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_D | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_E | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_F | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
3sdm_G | 2e-90 | 501 | 944 | 30 | 445 | Serine/threonine-protein kinase/endoribonuclease IRE1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002958109.1 | 0.0 | hypothetical protein VOLCADRAFT_107956 | ||||
TrEMBL | D8UHE6 | 0.0 | D8UHE6_VOLCA; Uncharacterized protein | ||||
STRING | XP_002958109.1 | 0.0 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2824 | 11 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 2e-19 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0037s0149.1.p |