PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0037s0149.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 1247aa    MW: 126935 Da    PI: 7.097
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0037s0149.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.41.6e-1011531178227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                           +  lC+f+ +tG+Ck+G++C F H++
  Vocar.0037s0149.1.p 1153 GKQLCDFYVKTGHCKFGESCVFDHPE 1178
                           678*********************96 PP
2zf-CCCH29.51.3e-0911951219327
                           S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                           + +C f++++ +C++G+ CkF+H+p
  Vocar.0037s0149.1.p 1195 EQICTFYLKNNECRFGPACKFHHPP 1219
                           679********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.201.5E-15445618No hitNo description
SuperFamilySSF561122.05E-54500775IPR011009Protein kinase-like domain
SMARTSM002202.1E-41506772IPR000719Protein kinase domain
PROSITE profilePS5001136.796506772IPR000719Protein kinase domain
PfamPF000698.1E-38511770IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.105.2E-38619773No hitNo description
PROSITE patternPS001080628640IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5139233.692775947IPR010513KEN domain
CDDcd104225.06E-49777944No hitNo description
PfamPF064794.7E-27842944IPR010513KEN domain
SMARTSM005801.1E-14878932IPR018997PUB domain
PROSITE profilePS5010314.97111511179IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-611511178IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-811531178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-511541178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-411551177IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-411921219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-511921218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.96211921220IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-711951219IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-411961218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006397Biological ProcessmRNA processing
GO:0006987Biological Processactivation of signaling protein activity involved in unfolded protein response
GO:0008380Biological ProcessRNA splicing
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0046777Biological Processprotein autophosphorylation
GO:0042406Cellular Componentextrinsic component of endoplasmic reticulum membrane
GO:0004521Molecular Functionendoribonuclease activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1247 aa     Download sequence    Send to blast
MEAWNATYSR IINLRPGASG GASGIPGGGG GGGPACGRGT RAAGGVLPLF TVGADHTLQA  60
YDPASRLRRW ALRFKTPPVG VFAEEHGDTN FLDPATVHPL LDLDPEPPAA AGAPTDARRR  120
RHHHHRGGGS GGGGSDSTGG GGDAADGARN LVLVGELKGS LYAMPAERVV LDERVESQPQ  180
PWDAIALPGP GSDYHSIKPL PLLPSTADAA VAPAVVPAAA EKAVVVHSGG ASSKDLVAYA  240
RDAETGEGVV SGLACRPPGL QILATVGEPT GVRQPWLPDA PKPGGGLRLP AAGNSSGGSG  300
AGAAAATGAF VLGVEAGSGM LTVVLLATAG VGAAAVLVVL QFRGGKTAAA GLNGKGSAAS  360
AAIDVAAAAA AAAVAGGAAA GEANIPAAAA AAMKSGGGGG PGGSRGAGSG RGRRKGRGGE  420
GGSSSSGGGG GGDGSSFRSS DTHLSSIPEN QQLPSGTEGP PSPSARPTFS PSPRGPPGAV  480
AAPHLPSAEP RVRLRGDGSL AIGRLVVGPG ILGYGSAGTV VYEGVLDGRP VAVKRLLRQF  540
TELARKEIEV LILSDEHPNV VRCFALEEDR EFVYLALEKC RSTLSDFLDT PAGRNQFVDP  600
DTKQPTARCL STLLDVCRGL AALHERGIVH RDLKPHNVLL TESGQRAKLS DMGLSKQLVP  660
EQSSFESHHG PGGSSGWQAP EQLIARDGGA ARQTRSMDVF SLGCILYYCM TGGRHPFGDN  720
HYERDARILR ADPVLGPLCT AGPEAFNLVS SCLAREPASR PAVGAVLGHP LWWGDDRRLG  780
FLVDISDRVE NEDREPDTSL LAAMESYAAV ALAGPGMEAL EGAGIFASSS SSPPSSNTPG  840
LTAALTAALA ASCLPNWGAS LPPELVGNLG RYRRYDFTSL RDLLRVVRNK RNHFREMPPA  900
LQSMLGPLPG GFLRFFCGRF PHLLLAVYVF AVRHLANEPT LQQYWGDGGG GEGAEPFVRT  960
FMAMYGNRMK PTKTQQQPQQ QQQQQSPAGG ASTQGLVSEP QAAQAVVGAA TIVITATATA  1020
TGTGGGEEAK IPVAPPPTAV AATSSSSVSS SAAVPVPTPS SDIDGSSSSS SPPSPPTTGP  1080
HGGDGTPFAA TNATATTNNT ANNGSSSSGS GDPQLPAFPP PPPQPPPPLV LVGYEPSGDD  1140
GAVMVREFPR RPGKQLCDFY VKTGHCKFGE SCVFDHPELY AVRLTALGLP LRPEEQICTF  1200
YLKNNECRFG PACKFHHPPL RPVYAGSLAV GVAEGAGGGA AGGGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3fbv_B2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_C2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_D2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_E2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_F2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_G2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_H2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_I2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_J2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_K2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_L2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_M2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3fbv_N2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_A2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_B2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_C2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_D2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_E2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_F2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
3sdm_G2e-9050194430445Serine/threonine-protein kinase/endoribonuclease IRE1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002958109.10.0hypothetical protein VOLCADRAFT_107956
TrEMBLD8UHE60.0D8UHE6_VOLCA; Uncharacterized protein
STRINGXP_002958109.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP28241112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-19C3H family protein