PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vocar.0023s0090.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 891aa MW: 88709.3 Da PI: 6.7117

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0023s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.5	1.4e-19	773	817	8	52
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++ F+lp++dAA+ Lg+++T LKr+CR++GI+RWP+Rk++sl Vocar.0023s0090.1.p 773 EQIYGTFDLPVADAARVLGISATELKRRCRRLGISRWPQRKLQSL 817 678889************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.79	750	837	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-17	773	817	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MSSSRTGFSS HGSCPGIAHQ FFNFCDPPSR QHAAFVNAKG DCVSGPAPYR KNTWPSAAAP 60 ETLSLPHDHS RAIAATISVK SNAGAAATMP VSQLPPHAAA GVDPYQCCKP PQAPAWDPYP 120 PPPQSLSGMV GRLARSGALA AHPHLHACYG PPASVMVPLP PTAARPPLAP RPPAGAAPRS 180 GGQAHGPVGM PLSSPSPSHQ HQVYPHQPMP PQAGSGAHPV APPAPSGTYP VSVPTSVSAP 240 PPPPGVWPWP WSLSQPPPPP PPPPSAAPPQ AGSGGGPVTG AGGNGSSGAS GWTASGPPGG 300 GGSGGGAVGG MCRSGGGSGG SGGWRPEDDE AEDALQELLL EEIAAAPWPH VHIPSLRAAG 360 IFIETCHGGR CDPTLMPPWP LPHLSGATPP SMPPWVTGAG ANAAAAMAAK QSTAAWDPMQ 420 MPPPLPPPMP AQIPPQPHLQ QQQHQQQQQL SPETSTLPHM APPLPPQLSP QQKHLTQSQS 480 ANPPQELLLP QLQSQAATDG LLLGPPPISA GGTGMMDVEI GLQSRSDDAL FAAWLSEMGT 540 GAGAPQAPPG MTSAGSGSGG AAVCWAPPGS TTLTGPTGTA PPPPTGAGAA QQDSGYNRAS 600 FVNSPNSTSM PTTPTVTNGR PRSETGCGGG FTLSASASAA ATAPSQTAAA AAAAAAVSAA 660 VAVVAVVEAA ADAADAAAAA NAAAACGGGD GVVRVEEAML SDDGEAETVS GGLNAAAAAA 720 AAAAGGAIGA GAHTGVVPAS TIDGSWDGGA GANTGNCAVI GGGAHTVAAS LREQIYGTFD 780 LPVADAARVL GISATELKRR CRRLGISRWP QRKLQSLRRI VQAAESDAGL SEDERKAVIE 840 LAARNREEIM ADPDAPLVDL LKTVRQTQYK QSFEKRAAAA AASRRAPPPM *

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MSSSRTGFSS HGSCPGIAHQ FFNFCDPPSR QHAAFVNAKG DCVSGPAPYR KNTWPSAAAP  60
ETLSLPHDHS RAIAATISVK SNAGAAATMP VSQLPPHAAA GVDPYQCCKP PQAPAWDPYP  120
PPPQSLSGMV GRLARSGALA AHPHLHACYG PPASVMVPLP PTAARPPLAP RPPAGAAPRS  180
GGQAHGPVGM PLSSPSPSHQ HQVYPHQPMP PQAGSGAHPV APPAPSGTYP VSVPTSVSAP  240
PPPPGVWPWP WSLSQPPPPP PPPPSAAPPQ AGSGGGPVTG AGGNGSSGAS GWTASGPPGG  300
GGSGGGAVGG MCRSGGGSGG SGGWRPEDDE AEDALQELLL EEIAAAPWPH VHIPSLRAAG  360
IFIETCHGGR CDPTLMPPWP LPHLSGATPP SMPPWVTGAG ANAAAAMAAK QSTAAWDPMQ  420
MPPPLPPPMP AQIPPQPHLQ QQQHQQQQQL SPETSTLPHM APPLPPQLSP QQKHLTQSQS  480
ANPPQELLLP QLQSQAATDG LLLGPPPISA GGTGMMDVEI GLQSRSDDAL FAAWLSEMGT  540
GAGAPQAPPG MTSAGSGSGG AAVCWAPPGS TTLTGPTGTA PPPPTGAGAA QQDSGYNRAS  600
FVNSPNSTSM PTTPTVTNGR PRSETGCGGG FTLSASASAA ATAPSQTAAA AAAAAAVSAA  660
VAVVAVVEAA ADAADAAAAA NAAAACGGGD GVVRVEEAML SDDGEAETVS GGLNAAAAAA  720
AAAAGGAIGA GAHTGVVPAS TIDGSWDGGA GANTGNCAVI GGGAHTVAAS LREQIYGTFD  780
LPVADAARVL GISATELKRR CRRLGISRWP QRKLQSLRRI VQAAESDAGL SEDERKAVIE  840
LAARNREEIM ADPDAPLVDL LKTVRQTQYK QSFEKRAAAA AASRRAPPPM *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002952004.1	1e-155	RWP-RK domain transcription factor
TrEMBL	D8U032	1e-153	D8U032_VOLCA; RWP-RK domain transcription factor
STRING	XP_002952004.1	1e-154	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0023s0090.1.p