PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	63.7	3.1e-20	845	895	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e ++++e l+++F+lp++d++++Lgv+ T LKr+CR +GI RWP+Rk++sl Vocar.0019s0157.1.p 845 EVQVTMELLRSMFHLPVADVSRTLGVSSTDLKRRCRALGIGRWPQRKLTSL 895 56899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.587	828	915	IPR003035	RWP-RK domain
Pfam	PF02042	5.4E-18	847	895	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MMELFDEDDE EFFRRSRQIC EGKRFADDVR HGLSSSGPTS RQFTFPQGYF NQNGDVLEAI 60 GAWPISAPSS LDQGMLAIDA RHNEDCALRP SSPKMASSHL ACLNLGSSLP ANPGPELSAL 120 PGAWLPQSQP QSAAQMSQLP ASWAAAPASA PSAAYIPAPA PSAVYVPAPA PAPSAAYMPA 180 PAPAPSAAYM PAPAPAPSAA YMPAPGPGPA QVPNPSPPAS MHASTSTVYA PPVPQLTAPA 240 RGGRWALGYP HKPSFGPHGG QQQQMVVAAG GAPPPPPLGA TPALVGADLP ASRSVVIGTV 300 FQETYEQCQR QPQQLLLHHQ HQGLQAQLPQ QCTVAQPHQQ QHHQQPRIQQ PMQPMQQMQQ 360 PVQLRMQQQM QSMQEQQQMQ QQQQQQQLEQ RKLELQRHSQ LQQHWQQQQQ QTQLQPAHST 420 TWYLEAKPQL LQPLVCAHPR GDLPSRYPRL QPLEAQPAQV GQLPSQPKLQ LQPDPLPLLP 480 LPPPPPPPLP PQLLSSSHYD DVQEEDYLMA EILAAPWPSS KTVQDATAAA HAAAAALART 540 KLVTHNERAN PQPKPSGAPQ QVSMEAAAAS AFAAPECGPN TPSQSPPPLP ESWQGSRRVQ 600 AAPDDAPLKK LNEAVVEAAP APARPRWISV HDQGAVPWKI KAELGGAEVK AEMRPLGQSA 660 MALGSDHPRA NLTLKQQTTL LYEHQLQLVV PQGDLRLGQL DMAASRKLAA GAAAAAAAAA 720 ASAGPVATDG ADRGGTLLLH VPLAGGRTSS TVVVDDMHDD SMQDDLPPPP SLPLDVFMAD 780 DLAECDGEDS DCDSDVTMTA AGGPTTATTS TAAAAPAAAT AAAATAVAAA TTADPSPIGG 840 SKAAEVQVTM ELLRSMFHLP VADVSRTLGV SSTDLKRRCR ALGIGRWPQR KLTSLDKLGG 900 AVASDPHISE DERQKTLALV ARNRDDIIRD PDTALDPWVA PKRQMHYKRK FVDRRGGGRR 960 SYGKKKGG*

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MMELFDEDDE EFFRRSRQIC EGKRFADDVR HGLSSSGPTS RQFTFPQGYF NQNGDVLEAI  60
GAWPISAPSS LDQGMLAIDA RHNEDCALRP SSPKMASSHL ACLNLGSSLP ANPGPELSAL  120
PGAWLPQSQP QSAAQMSQLP ASWAAAPASA PSAAYIPAPA PSAVYVPAPA PAPSAAYMPA  180
PAPAPSAAYM PAPAPAPSAA YMPAPGPGPA QVPNPSPPAS MHASTSTVYA PPVPQLTAPA  240
RGGRWALGYP HKPSFGPHGG QQQQMVVAAG GAPPPPPLGA TPALVGADLP ASRSVVIGTV  300
FQETYEQCQR QPQQLLLHHQ HQGLQAQLPQ QCTVAQPHQQ QHHQQPRIQQ PMQPMQQMQQ  360
PVQLRMQQQM QSMQEQQQMQ QQQQQQQLEQ RKLELQRHSQ LQQHWQQQQQ QTQLQPAHST  420
TWYLEAKPQL LQPLVCAHPR GDLPSRYPRL QPLEAQPAQV GQLPSQPKLQ LQPDPLPLLP  480
LPPPPPPPLP PQLLSSSHYD DVQEEDYLMA EILAAPWPSS KTVQDATAAA HAAAAALART  540
KLVTHNERAN PQPKPSGAPQ QVSMEAAAAS AFAAPECGPN TPSQSPPPLP ESWQGSRRVQ  600
AAPDDAPLKK LNEAVVEAAP APARPRWISV HDQGAVPWKI KAELGGAEVK AEMRPLGQSA  660
MALGSDHPRA NLTLKQQTTL LYEHQLQLVV PQGDLRLGQL DMAASRKLAA GAAAAAAAAA  720
ASAGPVATDG ADRGGTLLLH VPLAGGRTSS TVVVDDMHDD SMQDDLPPPP SLPLDVFMAD  780
DLAECDGEDS DCDSDVTMTA AGGPTTATTS TAAAAPAAAT AAAATAVAAA TTADPSPIGG  840
SKAAEVQVTM ELLRSMFHLP VADVSRTLGV SSTDLKRRCR ALGIGRWPQR KLTSLDKLGG  900
AVASDPHISE DERQKTLALV ARNRDDIIRD PDTALDPWVA PKRQMHYKRK FVDRRGGGRR  960
SYGKKKGG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002950054.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8TUK1	0.0	D8TUK1_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002950054.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	5e-11	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0019s0157.1.p