PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vocar.0015s0235.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 971aa MW: 98155.1 Da PI: 6.7565

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0015s0235.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.5	2.3e-22	664	713	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+ e l++ ++l+i++AA+eLg+++T LK CR +GI+RWP+Rk+ks+ Vocar.0015s0235.1.p 664 ASITKERLQQVYHLNIEEAARELGIGMTKLKEHCRTLGIPRWPSRKLKSM 713 789*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	649	733	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-21	665	712	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MESNGSTAFH AAEFQANVAL VGVATSASLA VQPSTLADMQ ASISAGDSFA FAAASLNPAA 60 MHMNNTVSDM TCAIASDEPP ACGELLRPLA AAEKLPVSDK PLWRPHSELL PPARLVEVAH 120 AALQSSGFRR KLATGAQQPS QHENPNTQPA PASSAAAEAN HTSAAKRELP SDNGCDSDRP 180 YDMKRPRNES CGETAPLLDK VERDAMEGSM DAAGGPVNVT SLLAMPPLVP TVKREVPAPT 240 ILPNASSMTP FSVPLPGQLS GSIDGIMPPL ADTASAAVNG PLKSAFSQAA SLPTEWQPGC 300 SVTTGRRSAR SPAPKGSRKL SLVRATSAEA NSGPLSRRCS GLGAAVLGHG PAEHAAAGTP 360 GGSTAAAPSC AFGPEPGVEN GGTESKSAGQ RGSANGGATA LLESAASADL RRLAQLAEAA 420 AMLEEQMVMK GCDRGAGGGG SGQDVGPGAR SGAPDESGNR AVGPAVRLGA DGSEQAVLRQ 480 RAASFNAGAL LPGSGSALAG ELRTATSVPA SFSAVLRSVG SLPGPVPDGH PASTSGACRI 540 GGGIGGSGRE GSPGAGDDDV LVGSRRRSLM DSEAASEGGS QGGHEMEDDE DEGDGIMGGG 600 DGSNDSAGGG SSAGGGSGRT LTERYRAALK ASAKQRGRGH TIMKLDPDKP PRGSNRNGLC 660 ARIASITKER LQQVYHLNIE EAARELGIGM TKLKEHCRTL GIPRWPSRKL KSMDKLIESL 720 NERAMTEPAT KEVIADILAE IESFKRAIYE NPCLEVEEDI KRLRQSNFKK EYQQRQVEQR 780 LRGGITEKGS VGTLGGGPGG SGRSTSVSSG AHLQSAGPSG AISSAALAPT ASGGTGAALP 840 PAVLSQPMLP AAALAANLGP ALGQLAAGAA AAQSSAQLVQ ALAQAQVQAH VQAQQLPGQV 900 SLLAHGQLQQ LLMAQPSGTL QQLMAQRALG GMPPPALLLP AMLSQHMQQP QLPKPVGPMA 960 AVGEAAPNAE *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MESNGSTAFH AAEFQANVAL VGVATSASLA VQPSTLADMQ ASISAGDSFA FAAASLNPAA  60
MHMNNTVSDM TCAIASDEPP ACGELLRPLA AAEKLPVSDK PLWRPHSELL PPARLVEVAH  120
AALQSSGFRR KLATGAQQPS QHENPNTQPA PASSAAAEAN HTSAAKRELP SDNGCDSDRP  180
YDMKRPRNES CGETAPLLDK VERDAMEGSM DAAGGPVNVT SLLAMPPLVP TVKREVPAPT  240
ILPNASSMTP FSVPLPGQLS GSIDGIMPPL ADTASAAVNG PLKSAFSQAA SLPTEWQPGC  300
SVTTGRRSAR SPAPKGSRKL SLVRATSAEA NSGPLSRRCS GLGAAVLGHG PAEHAAAGTP  360
GGSTAAAPSC AFGPEPGVEN GGTESKSAGQ RGSANGGATA LLESAASADL RRLAQLAEAA  420
AMLEEQMVMK GCDRGAGGGG SGQDVGPGAR SGAPDESGNR AVGPAVRLGA DGSEQAVLRQ  480
RAASFNAGAL LPGSGSALAG ELRTATSVPA SFSAVLRSVG SLPGPVPDGH PASTSGACRI  540
GGGIGGSGRE GSPGAGDDDV LVGSRRRSLM DSEAASEGGS QGGHEMEDDE DEGDGIMGGG  600
DGSNDSAGGG SSAGGGSGRT LTERYRAALK ASAKQRGRGH TIMKLDPDKP PRGSNRNGLC  660
ARIASITKER LQQVYHLNIE EAARELGIGM TKLKEHCRTL GIPRWPSRKL KSMDKLIESL  720
NERAMTEPAT KEVIADILAE IESFKRAIYE NPCLEVEEDI KRLRQSNFKK EYQQRQVEQR  780
LRGGITEKGS VGTLGGGPGG SGRSTSVSSG AHLQSAGPSG AISSAALAPT ASGGTGAALP  840
PAVLSQPMLP AAALAANLGP ALGQLAAGAA AAQSSAQLVQ ALAQAQVQAH VQAQQLPGQV  900
SLLAHGQLQQ LLMAQPSGTL QQLMAQRALG GMPPPALLLP AMLSQHMQQP QLPKPVGPMA  960
AVGEAAPNAE *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002946737.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8TJX2	0.0	D8TJX2_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002946737.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-21	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0015s0235.1.p