PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	62.1	9.8e-20	1709	1757	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ei+ + l+k ++lpi++AA L++++TvLK+ CR++ ++RWP+Rk++s Vocar.0014s0106.1.p 1709 REITKSALRKVYHLPINEAAAALNIGVTVLKKYCRKFRVPRWPYRKLQS 1757 689********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.495	1694	1778	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-19	1711	1757	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 1885 aa Download sequence Send to blast
MNTGKGLKAR RKFHGLPNSL MRRASKTWLG PNKCTSKPAG RGTLLAPSLY FYYVDQFRQW 60 FTEYEPPSLK GTTLQEPLCS ARRRRACRRL MEDLAEVLTE FHPSTGKVPH LDTLSQAHLP 120 IARELPNNDS LRLEEYLSAG SFAVLDAALH SICESQATLP ETNAGSSAPS SYYHSHQDQN 180 ALTGQGTNPM LATRQGFTSG QLAASTTGQT LQQQTQQHQQ QQQEHQHRQA ADGGQAAASG 240 TGSSGLFPRQ MNPQLAQPPT PQQQQQQQPS QHQLQELQHQ HLHQHQHQHQ HQQHQQQQQQ 300 QLLQGTRTSP AQQPSAPAQQ PQQQHSLQNH QQQQQQHQQH QQQKRPSLAS GGAACSRGPS 360 RSESNSNGSN QISRDATVPP PHESSTGESG PRADSGPMEV QVARATGATA AAVVTTVAAG 420 AAGGGGGSGA SGSRGDGHVA SGPAAGPAGG ASDQTHPPPP PPEVSTPPAE GRKLREEEQR 480 DVEEFVNLAW NANYKQGDAV RLEFTGPNVG ARTTGRLMAA ATAQLMRRGV AAAQAGQITG 540 LNTSIRSAME RHLPVKRDKA HLEGDKGTEL LTEALRHITE QLMSRGVDPR SIIENHSNGT 600 PPGGGGAATA VAAAAAAANG GAGGSKTSLG SIGDNSADTA GLKLPSPPPV AAGAMVGMPP 660 PGGAMDLIQL QQQQQLQQQL QLQMQMQQAP QFQQLMLEAT REHHQPTGPM GSTGGPPLVD 720 YGGFFSPTGE TGPVGVPAAG GGVSDILQEA FRAFAAEQEA AAVAAAAAAA AAEGGDGSGG 780 DMGATATMMD FQAAAAAAAS SVLPNAATAA VPLYQRTTCS VTMIDVGHDE SELSSPHAAA 840 AAAAAAAAAA AAGGTLLSEG MQGACGPPGF RSGQWIPTGR SMVGGKAATL PSSSSSLQTT 900 ASAAAAAAAA AAAALPHQQQ QQMLHHSAAA GCAAGGMMSS FGGPPTCISP PPGPETSDKR 960 PLSPSRFDTG SPHRLSNAMS ILRNRSADLG SLDMIMSNDY FMDGVDPLLN DGRQPSIADK 1020 FLMYIDGGGH PGMQPGGLIG LASGFPLGPI PSGTAGDAAA AAAAATAGGP QRQLPAAGLH 1080 SSGAGGAGGS ASAAAVDVFQ NPHMPQAAVD GTCGGDATPG GGGGGGGGGG GNCLMGQDPR 1140 MIVYDMDAMM RSQAPTAFGG GVGVTTSAKP QSFCRPSDNT LNTGNGSHTR EPLPSVDGGG 1200 SPAAPFGSSF AFAMAQYGNC PAADGGGDVG SVDGLARITS APPGVLGDES AFCPRMSSAH 1260 AHGLSMAHGK GMSYSVPYSH GQGHPLAMNS APAIWTGLGD SNLGGMDVYS MEHMGMPAPP 1320 GSAVERQQQV RQLQQQQQLQ LEQLQQEQQQ QQQQQLQQQQ LQQHQHQQQQ QLFAQLFPGA 1380 QQAVCGGGGG SAGGSSISIS PSTMMSPTGN SPVMHFMPTS FPPQRDDSGC LSIGHKAHML 1440 PRISTAVGLP PHFQPPPSPP SVVRNMRGGC AAANSVRAGG GAAAAAAAGQ APARSPRSSA 1500 PGTPRSPRAP ATGTPRSRTK AGCTPLSAPS PGAVKAQLDE MMRVDPVAAA AAAAGGGSGM 1560 SESLAAAAAA AAVAAVAAAP EAALAAAAAA GLIVAEDAGA AVDSPGASGG GNLRRSRREA 1620 RGARGSTLGT ARTGRGGRSR GTDDDDEDYA TDADEDALSS DDGDDEGGGG GGGAGRGGGG 1680 GGGGTTSGEG YVDEDSVLVV RAVRDGVRRE ITKSALRKVY HLPINEAAAA LNIGVTVLKK 1740 YCRKFRVPRW PYRKLQSMAK LIESFERYKK NAFSNGDIEG AADCQDVIDR LLKFREEVYD 1800 NPDKDIDESV KKLRQANFKI EYRQRQGQTQ GAPPSTLTRS SLNGETPGAA TGVGGAPSSH 1860 DLRRDFETLS VNAASAEVTE PPPA*

Sequence ? help Back to Top

Protein Sequence Length: 1885 aa Download sequence Send to blast

MNTGKGLKAR RKFHGLPNSL MRRASKTWLG PNKCTSKPAG RGTLLAPSLY FYYVDQFRQW  60
FTEYEPPSLK GTTLQEPLCS ARRRRACRRL MEDLAEVLTE FHPSTGKVPH LDTLSQAHLP  120
IARELPNNDS LRLEEYLSAG SFAVLDAALH SICESQATLP ETNAGSSAPS SYYHSHQDQN  180
ALTGQGTNPM LATRQGFTSG QLAASTTGQT LQQQTQQHQQ QQQEHQHRQA ADGGQAAASG  240
TGSSGLFPRQ MNPQLAQPPT PQQQQQQQPS QHQLQELQHQ HLHQHQHQHQ HQQHQQQQQQ  300
QLLQGTRTSP AQQPSAPAQQ PQQQHSLQNH QQQQQQHQQH QQQKRPSLAS GGAACSRGPS  360
RSESNSNGSN QISRDATVPP PHESSTGESG PRADSGPMEV QVARATGATA AAVVTTVAAG  420
AAGGGGGSGA SGSRGDGHVA SGPAAGPAGG ASDQTHPPPP PPEVSTPPAE GRKLREEEQR  480
DVEEFVNLAW NANYKQGDAV RLEFTGPNVG ARTTGRLMAA ATAQLMRRGV AAAQAGQITG  540
LNTSIRSAME RHLPVKRDKA HLEGDKGTEL LTEALRHITE QLMSRGVDPR SIIENHSNGT  600
PPGGGGAATA VAAAAAAANG GAGGSKTSLG SIGDNSADTA GLKLPSPPPV AAGAMVGMPP  660
PGGAMDLIQL QQQQQLQQQL QLQMQMQQAP QFQQLMLEAT REHHQPTGPM GSTGGPPLVD  720
YGGFFSPTGE TGPVGVPAAG GGVSDILQEA FRAFAAEQEA AAVAAAAAAA AAEGGDGSGG  780
DMGATATMMD FQAAAAAAAS SVLPNAATAA VPLYQRTTCS VTMIDVGHDE SELSSPHAAA  840
AAAAAAAAAA AAGGTLLSEG MQGACGPPGF RSGQWIPTGR SMVGGKAATL PSSSSSLQTT  900
ASAAAAAAAA AAAALPHQQQ QQMLHHSAAA GCAAGGMMSS FGGPPTCISP PPGPETSDKR  960
PLSPSRFDTG SPHRLSNAMS ILRNRSADLG SLDMIMSNDY FMDGVDPLLN DGRQPSIADK  1020
FLMYIDGGGH PGMQPGGLIG LASGFPLGPI PSGTAGDAAA AAAAATAGGP QRQLPAAGLH  1080
SSGAGGAGGS ASAAAVDVFQ NPHMPQAAVD GTCGGDATPG GGGGGGGGGG GNCLMGQDPR  1140
MIVYDMDAMM RSQAPTAFGG GVGVTTSAKP QSFCRPSDNT LNTGNGSHTR EPLPSVDGGG  1200
SPAAPFGSSF AFAMAQYGNC PAADGGGDVG SVDGLARITS APPGVLGDES AFCPRMSSAH  1260
AHGLSMAHGK GMSYSVPYSH GQGHPLAMNS APAIWTGLGD SNLGGMDVYS MEHMGMPAPP  1320
GSAVERQQQV RQLQQQQQLQ LEQLQQEQQQ QQQQQLQQQQ LQQHQHQQQQ QLFAQLFPGA  1380
QQAVCGGGGG SAGGSSISIS PSTMMSPTGN SPVMHFMPTS FPPQRDDSGC LSIGHKAHML  1440
PRISTAVGLP PHFQPPPSPP SVVRNMRGGC AAANSVRAGG GAAAAAAAGQ APARSPRSSA  1500
PGTPRSPRAP ATGTPRSRTK AGCTPLSAPS PGAVKAQLDE MMRVDPVAAA AAAAGGGSGM  1560
SESLAAAAAA AAVAAVAAAP EAALAAAAAA GLIVAEDAGA AVDSPGASGG GNLRRSRREA  1620
RGARGSTLGT ARTGRGGRSR GTDDDDEDYA TDADEDALSS DDGDDEGGGG GGGAGRGGGG  1680
GGGGTTSGEG YVDEDSVLVV RAVRDGVRRE ITKSALRKVY HLPINEAAAA LNIGVTVLKK  1740
YCRKFRVPRW PYRKLQSMAK LIESFERYKK NAFSNGDIEG AADCQDVIDR LLKFREEVYD  1800
NPDKDIDESV KKLRQANFKI EYRQRQGQTQ GAPPSTLTRS SLNGETPGAA TGVGGAPSSH  1860
DLRRDFETLS VNAASAEVTE PPPA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002954587.1	0.0	RWP-RK domain-containing transcription factor
TrEMBL	D8U7F8	0.0	D8U7F8_VOLCA; RWP-RK domain-containing transcription factor
STRING	XP_002954587.1	0.0	(Volvox carteri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-20	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0014s0106.1.p