PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0004s0259.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 28444.2 Da PI: 5.2072 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 70 | 120 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 gy+GVr+++ +g+++AeIrd + kr ++g+f t+eeAa+a+++a+++l+g+ Vocar.0004s0259.1.p 70 GYRGVRRRP-WGSYAAEIRDaS-----SgKRRWIGTFKTPEEAARAYDEAALALHGP 120 8********.**********55.....45**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.272 | 70 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-30 | 70 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-20 | 70 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-13 | 70 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-28 | 71 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.56E-28 | 71 | 126 | No hit | No description |
PRINTS | PR00367 | 6.0E-9 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLYNFMPSGA LQVLIPLGAF HHEEHVPSSE EEPFVQRPVT RRKRALDEDP DYHDSRPAQN 60 DEHGPINKVG YRGVRRRPWG SYAAEIRDAS SGKRRWIGTF KTPEEAARAY DEAALALHGP 120 RAKTNFVYDC QMQRQQQQQQ QQPAKSVQVL QMVFRRDSDD SNCSMTAPLP YTDYLVTTDA 180 QRQRQQHQQQ DEQLEHEKQD EQQDEQQEGD EQEQDPQQQQ QQQPRLEALV EVAHFFGRRD 240 FAMA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 62 | 132 | 11 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002949626.1 | 1e-133 | hypothetical protein VOLCADRAFT_90047 | ||||
TrEMBL | D8TTC7 | 1e-131 | D8TTC7_VOLCA; Uncharacterized protein | ||||
STRING | XP_002949626.1 | 1e-132 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 9e-15 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0004s0259.1.p |