PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Vocar.0001s1700.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

Nin-like

Protein Properties

Length: 811aa MW: 85176.3 Da PI: 7.0415

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s1700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	61.1	2e-19	696	744	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+l+ +F+lp +d+ + Lg+++T LKr+CR +GI+RWPhRk++sl Vocar.0001s1700.1.p 696 ALTLETLRGMFELPAQDVVRALGISATDLKRRCRALGIRRWPHRKLASL 744 799*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.768	682	764	IPR003035	RWP-RK domain
Pfam	PF02042	6.2E-18	697	744	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence Send to blast
MLSCGAHLGG PARPLSMMAA KARTDNEGCG FPSMSYSYER YPQTGCAFAP EEMSVMEDFV 60 TCGGSDAPAS RAAAELGPAF AANFVSSSAH LYTSSHCARE APLASRASGQ PPSSSYQLGT 120 YMRVQDVSSL AAAADGRYVH PSNLSTGLPA GFTSPSQQQV VPSGPNFGYE PKRPAASVEL 180 PSQNIFRSHQ YYHHHHHHHH HHQQQQQQQQ QPSHQPASRG TLGAALSLPS PAPALMMPWP 240 WSQSSSALSF SPPAHQHHPI PLMSFSAEAR LPQGLSGWHP DSGMDLGLEE QLYAEIEAAP 300 WPIVQHPPAP PLSLHASAFP AGGEAHRQLQ QQQFRQQGRQ LHHHHQQQLQ QRQEFKQLQQ 360 QQQQQQQHRF EQLGLQQQQQ QQQEAPNRFS VPFPCQSAGA MATVPRDGAD PTTAAVATLP 420 PPPPPPLPHA ASPPAATNGR NDSSITAIPC QPNPTVTTEL LLCHQFECGA TMGGVSTPEQ 480 QPPPPPPAWA RVPMAPPLLP TAAAPCPSAA VGTITSTAAG GTCVAISAAD ISMDDPMSLC 540 TAYSGGRLCN PRQQQRLQSS TSGMIAASPC AAELAAAAAA TGYSAHKTSD TDMLPAVASA 600 VAAAGSPDAG GSGAGGGGAL TGTAATGGLP AAITTKDIGD CPEVLGAEGP SGGALCCDAA 660 AAAAEPPGQL TRSTRVVGGD GGGGGVHVVG RIPRNALTLE TLRGMFELPA QDVVRALGIS 720 ATDLKRRCRA LGIRRWPHRK LASLQRLVQA VNEDVDLPAN EREVVLETVA ATRSRIFEDP 780 NVDLDSSLKV LRQVQYKRHF LERRGYGGSG *

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence Send to blast

MLSCGAHLGG PARPLSMMAA KARTDNEGCG FPSMSYSYER YPQTGCAFAP EEMSVMEDFV  60
TCGGSDAPAS RAAAELGPAF AANFVSSSAH LYTSSHCARE APLASRASGQ PPSSSYQLGT  120
YMRVQDVSSL AAAADGRYVH PSNLSTGLPA GFTSPSQQQV VPSGPNFGYE PKRPAASVEL  180
PSQNIFRSHQ YYHHHHHHHH HHQQQQQQQQ QPSHQPASRG TLGAALSLPS PAPALMMPWP  240
WSQSSSALSF SPPAHQHHPI PLMSFSAEAR LPQGLSGWHP DSGMDLGLEE QLYAEIEAAP  300
WPIVQHPPAP PLSLHASAFP AGGEAHRQLQ QQQFRQQGRQ LHHHHQQQLQ QRQEFKQLQQ  360
QQQQQQQHRF EQLGLQQQQQ QQQEAPNRFS VPFPCQSAGA MATVPRDGAD PTTAAVATLP  420
PPPPPPLPHA ASPPAATNGR NDSSITAIPC QPNPTVTTEL LLCHQFECGA TMGGVSTPEQ  480
QPPPPPPAWA RVPMAPPLLP TAAAPCPSAA VGTITSTAAG GTCVAISAAD ISMDDPMSLC  540
TAYSGGRLCN PRQQQRLQSS TSGMIAASPC AAELAAAAAA TGYSAHKTSD TDMLPAVASA  600
VAAAGSPDAG GSGAGGGGAL TGTAATGGLP AAITTKDIGD CPEVLGAEGP SGGALCCDAA  660
AAAAEPPGQL TRSTRVVGGD GGGGGVHVVG RIPRNALTLE TLRGMFELPA QDVVRALGIS  720
ATDLKRRCRA LGIRRWPHRK LASLQRLVQA VNEDVDLPAN EREVVLETVA ATRSRIFEDP  780
NVDLDSSLKV LRQVQYKRHF LERRGYGGSG *

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-16	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Vocar.0001s1700.1.p