PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16650.1
Common NameLR48_Vigan01g300400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CAMTA
Protein Properties Length: 906aa    MW: 102680 Da    PI: 7.8018
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1103.81.2e-32331295118
            CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                     ++rwl+++ei+a+L n++ +                 +n k v    k G++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n++f rrcy
  Vang11g16650.1  33 RTRWLRPNEIHAMLCNYKYFP----------------INVKPVN-LPKNGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCY 110
                     666777777777666666655................5555555.6689********************************************** PP

            CG-1 100 wlLeeelekivlvhylevk 118
                     wlL++++e+ivlvhy+e++
  Vang11g16650.1 111 WLLDKSMEHIVLVHYRETQ 129
                     ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143758.44325134IPR005559CG-1 DNA-binding domain
SMARTSM010768.9E-5128129IPR005559CG-1 DNA-binding domain
PfamPF038593.7E-2663127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.4E-4350438IPR013783Immunoglobulin-like fold
PfamPF018338.9E-5351437IPR002909IPT domain
SuperFamilySSF812965.6E-16351438IPR014756Immunoglobulin E-set
SuperFamilySSF484036.68E-19526652IPR020683Ankyrin repeat-containing domain
PfamPF127964.6E-7541616IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.4E-17545649IPR020683Ankyrin repeat-containing domain
CDDcd002044.16E-15545646No hitNo description
PROSITE profilePS5029715.963554646IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.873587619IPR002110Ankyrin repeat
SMARTSM002481.1E-4587616IPR002110Ankyrin repeat
SMARTSM002481100626655IPR002110Ankyrin repeat
SuperFamilySSF525401.25E-9641801IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500966.522698727IPR000048IQ motif, EF-hand binding site
SMARTSM000157.7750772IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.108751780IPR000048IQ motif, EF-hand binding site
PfamPF006120.035754771IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0099773795IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.517774798IPR000048IQ motif, EF-hand binding site
PfamPF006120.012775795IPR000048IQ motif, EF-hand binding site
SMARTSM0001511854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206856884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MANNLAAQLV GSEIHGFHTL QDLDVRSIME EARTRWLRPN EIHAMLCNYK YFPINVKPVN  60
LPKNGHNWKK KKDGKTVKEA HEHLKVGNEE RIHVYYAHGQ DNSNFVRRCY WLLDKSMEHI  120
VLVHYRETQE MQGSPVTPVN SHSSSVSDPP APWVVLDEID SGTTTTYAGD MTDNVKDKSH  180
ELRLHEINTL EWDDLVDAND HNASTMPNGG SVAYFNQQDQ ILLNGSFSNV VKNQSAEISS  240
FNCHPLPNAG SNSVTYNFSE SATLQMMGNQ ANPNEQRNNI VSLSAGSFDP LVSDRLQSQD  300
SFGMWVNHIM SDSPCSVDDQ ALESPVSSVH EPYLSPVVDG LQISQPEQVF TITDVSPTWV  360
SSSEKSKVLV TGFFHKDYMH LSKSNLLCVC GDVSVPAEIV QVGFYRCWVP PHSPGIVNLY  420
LSLDGHKPIS QVVNFEYRTL VLHDPTAAME ENNNWDEFRL QMRLTYLLFA KQLSLDVISF  480
KVPPNRLKEA RQFALRTSFI SNSWQYLIKS TEDNQIPFSQ AKDALLGIAL KNRLREWLFE  540
RIVLGYKTTE YDSHGQSVIH LCAILGYTWA VSLFSWSGLS LDFRDRFGWT ALHWAAYCGR  600
EKMVATLLSA GAKSNLVTDP TPKNPGGCTA ADLAYMRGHD GLAAYLSEKC LVQHFNDMSL  660
AGNISGSLET TTTDTVNSAS VTDEQQNMKD TLAAYRTAAD AAARIQAAFR EHNLKLRTNA  720
VMSSNPEAEA RKIVAAMKIQ HAFRNFETKK MMGAAARIQC TFRTWKIRKE FLLMRRQAVK  780
IQAAFRCFQL RKHYRKILWS VGVVEKAVLR WRLKRRGFRG LHVRTVEVGK GDQDKENVVE  840
EEFFKTGRKQ AEERVERSVV RVQAMFRSKK AQEEYRRMKV ALDQAKLERE YEQLLSTEVD  900
MELKA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435424.10.0PREDICTED: calmodulin-binding transcription activator 5-like
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A0L9TSB20.0A0A0L9TSB2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9120.0A0A0S3R912_PHAAN; Uncharacterized protein
STRINGXP_007154355.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  4. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]