PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g07450.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 317aa    MW: 34776.1 Da    PI: 8.2028
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g07450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-092242525
                    --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                    +C++++r+G Ck+G +Ck++H
  Vang11g07450.1 22 ECKYYQRSGGCKFGKSCKYNH 42
                    7******************** PP
2zf-CCCH42.31.2e-136993226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    ++++C++++rtG Ck+G++CkF+H+
  Vang11g07450.1 69 GERECPYYMRTGSCKFGANCKFNHP 93
                    789*********************9 PP
3zf-CCCH30.18.3e-10203229127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Ck+ ++CkF+H++
  Vang11g07450.1 203 PGEPECSYFLKTGDCKFKSNCKFHHPK 229
                     5799*********************96 PP
4zf-CCCH36.77.3e-12250274226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++r+G+Ck+G+ CkF H+
  Vang11g07450.1 250 DQSVCSHYSRYGICKFGPACKFDHP 274
                     5789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9671745IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-41744IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-62047IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-72242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-42344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.776795IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-66794IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-116993IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-67095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-57392IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4202229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061202230IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-7204229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6207231IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6246274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.314248276IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5248275IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9250274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4253274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MKAVREKAGE REEPTDRSSS TECKYYQRSG GCKFGKSCKY NHTRGKISTT PAPVPVFELN  60
FLGLPIRQGE RECPYYMRTG SCKFGANCKF NHPDPTVGGC DPPSGFGNGG PISLQGVSRP  120
SVPSWSSPRS LNEASPFVPM MLSPTQGVST QSSDWNGYQA SVYLPERNMH PPSTFVLNNP  180
AVDTNVYLHH QKQMSVEEFP ERPGEPECSY FLKTGDCKFK SNCKFHHPKN RIARLPPCNL  240
SDKGLPLRPD QSVCSHYSRY GICKFGPACK FDHPVNLQPL MMSGLGDQSY SNSASVEVAG  300
IGESTAETDV TIQQSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g07450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-152AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409532.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-112C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0S3R5V60.0A0A0S3R5V6_PHAAN; Uncharacterized protein
STRINGXP_007155512.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-108C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]