PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g15650.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 1106aa MW: 122700 Da PI: 6.7118

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g15650.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.9e-40	247	324	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Vang06g15650.1 247 VCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNH 324 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.6E-33	241	309	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.146	245	322	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-37	246	325	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-29	248	321	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	9.3E-7	858	991	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.06E-8	873	991	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.29E-7	879	990	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1106 aa Download sequence Send to blast
MNGVDPVQRV QAAPETPFPS TEPVRHSRAH LPTSTRRRSA LLLKPNLRRT DKLFFWLKIG 60 RGGCGLVLEL SKDSVVDFGN WKSWCERGFW LTMEARFGAE AYHFFGVGAS SDLRGMGKRS 120 SEWDLNDWRW DGDLFIASRL NPVPADGVGV GQQFFPLGSG IPVVGGPSNS SSCSEEVDPR 180 DPKGNKEGDK KRRVIVLEDD GLNEEAGTLS LKLGGHASAV VDREVASWDG MNGKKSRVSG 240 STSNRAVCQV EDCSADLSKA KDYHRRHKVC EMHSKASRAL VGNAMQRFCQ QCSRFHMLQE 300 FDEGKRSCRR RLAGHNKRRR KTNHEPVPSG SSLNDDQTSS YLLISLLKII SNMHSDRSNQ 360 TTDQDLLTHI LRSLASQNGE QGGKNISNLL QEPENLLREG GSSRKSEMVS TLFSNGSQGS 420 PTVTRQHEAV SMAKLQQQVT HAHDARASDQ QITSSIKPSM SNSPPAYSEA RDSTAGQIKM 480 NNFDLNDIYI DSDDGMEDLE RLPVSANLVT SSLDYPWAQQ DSHQSSPPQT SGNSDSASAQ 540 SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL SHSPTDMESY IRPGCIVLTI 600 YLRQAEALWE ELCYDLTSSL NRLLDVSDDT FWRNGWVHIR VQHQMAFIFN GQVVIDTSLP 660 FRSNNYSKIL TVSPIAVPAS ERAQFSVKGV NLIRPATRLM CALEGKYLVC EDAHMSMDQC 720 SNEPDELQCV QFSCSVPVMN GRGFIEIEDQ GLSSSFFPFI VVEEDVCSEI CTLEPLLEIS 780 ETDPDIEGTG KVKAKNQAMD FIHEMGWLLH RSQLKLRMVH LNSTVDPFPL KRFKWLIEFS 840 MDHDWCAAVK KLLNLLLDGT VNAGDHPSLY LALSDMGLLH KAVRRNSKQL VELLLRYVPE 900 NISDELGPEV KALVDGENKT FLFRPDVVGP AGLTPLHIAA GKDGSEDVLD ALTNDPCMVG 960 IEAWKNARDS TGSTPEDYAR LRGHYAYIHL VQKKINKRHG AAHVVVEIPS NTTESNTNQK 1020 QNETSTSFEI GKPAVRLSQG HCKLCDSKIS CRTAVGRSLV YRPAMLSMVA IAAVCVCVAL 1080 LFKSSPEVIC MFRPFRWETL DFGTS*

Sequence ? help Back to Top

Protein Sequence Length: 1106 aa Download sequence Send to blast

MNGVDPVQRV QAAPETPFPS TEPVRHSRAH LPTSTRRRSA LLLKPNLRRT DKLFFWLKIG  60
RGGCGLVLEL SKDSVVDFGN WKSWCERGFW LTMEARFGAE AYHFFGVGAS SDLRGMGKRS  120
SEWDLNDWRW DGDLFIASRL NPVPADGVGV GQQFFPLGSG IPVVGGPSNS SSCSEEVDPR  180
DPKGNKEGDK KRRVIVLEDD GLNEEAGTLS LKLGGHASAV VDREVASWDG MNGKKSRVSG  240
STSNRAVCQV EDCSADLSKA KDYHRRHKVC EMHSKASRAL VGNAMQRFCQ QCSRFHMLQE  300
FDEGKRSCRR RLAGHNKRRR KTNHEPVPSG SSLNDDQTSS YLLISLLKII SNMHSDRSNQ  360
TTDQDLLTHI LRSLASQNGE QGGKNISNLL QEPENLLREG GSSRKSEMVS TLFSNGSQGS  420
PTVTRQHEAV SMAKLQQQVT HAHDARASDQ QITSSIKPSM SNSPPAYSEA RDSTAGQIKM  480
NNFDLNDIYI DSDDGMEDLE RLPVSANLVT SSLDYPWAQQ DSHQSSPPQT SGNSDSASAQ  540
SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL SHSPTDMESY IRPGCIVLTI  600
YLRQAEALWE ELCYDLTSSL NRLLDVSDDT FWRNGWVHIR VQHQMAFIFN GQVVIDTSLP  660
FRSNNYSKIL TVSPIAVPAS ERAQFSVKGV NLIRPATRLM CALEGKYLVC EDAHMSMDQC  720
SNEPDELQCV QFSCSVPVMN GRGFIEIEDQ GLSSSFFPFI VVEEDVCSEI CTLEPLLEIS  780
ETDPDIEGTG KVKAKNQAMD FIHEMGWLLH RSQLKLRMVH LNSTVDPFPL KRFKWLIEFS  840
MDHDWCAAVK KLLNLLLDGT VNAGDHPSLY LALSDMGLLH KAVRRNSKQL VELLLRYVPE  900
NISDELGPEV KALVDGENKT FLFRPDVVGP AGLTPLHIAA GKDGSEDVLD ALTNDPCMVG  960
IEAWKNARDS TGSTPEDYAR LRGHYAYIHL VQKKINKRHG AAHVVVEIPS NTTESNTNQK  1020
QNETSTSFEI GKPAVRLSQG HCKLCDSKIS CRTAVGRSLV YRPAMLSMVA IAAVCVCVAL  1080
LFKSSPEVIC MFRPFRWETL DFGTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	239	321	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g15650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014492405.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_014492406.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_022633791.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0S3SQY1	0.0	A0A0S3SQY1_PHAAN; Uncharacterized protein
STRING	XP_007145109.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]