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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g13670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 292aa MW: 32099.9 Da PI: 7.4404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2.1e-11 | 50 | 92 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Vang06g13670.1 50 GEFSEDEDRIICTLFGSIGSR-WSIIASQLP-GRTDNDIKNYWNT 92 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.17 | 12 | 43 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-7 | 22 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.12E-20 | 29 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.079 | 44 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 47 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-11 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-10 | 50 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.55E-8 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MVQVETGFPS HIKLFGEIRP KVSKWSGLKR CGKSCRLRWL NYLRPNLKHG EFSEDEDRII 60 CTLFGSIGSR WSIIASQLPG RTDNDIKNYW NTKLKKKMMG IMNPSALKKP HQVTLSSMLQ 120 NSTPSTSSSS SLSLKRNHSS NHQPHGPFTS PDTISYESLL SGNSCSTFES LYQVNCGFML 180 ETSCSSSSDG SCNNNNQMNH VKGAEVGDVG VGGFGDQIGG LSYLSSGVED TQKLVSSNGG 240 RTSGWTGEES RLWGESPLEY GLEEIKELMS TSSCNNFMFD DSKTGEMVMY Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-19 | 12 | 98 | 16 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 8e-19 | 10 | 98 | 40 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 5e-19 | 12 | 98 | 16 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-19 | 12 | 98 | 16 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g13670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413859.1 | 0.0 | PREDICTED: transcription factor RAX2 | ||||
TrEMBL | A0A0L9TXD2 | 0.0 | A0A0L9TXD2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SR88 | 0.0 | A0A0S3SR88_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144336.1 | 1e-131 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 4e-42 | myb domain protein 36 |