PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g12780.2

Common Name

LR48_Vigan10g089600

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 1099aa MW: 123008 Da PI: 9.4038

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g12780.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.3	4.9e-10	68	104	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a + +Rt +++ Vang06g12780.2 68 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 104 6***************99.*****.*99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-11	63	112	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.386	64	115	IPR017884	SANT domain
SMART	SM00717	7.3E-6	65	113	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	68	108	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-8	68	108	IPR001005	SANT/Myb domain
CDD	cd00167	6.74E-6	69	103	No hit	No description
SMART	SM01135	6.1E-52	597	698	IPR033471	DIRP domain
Pfam	PF06584	4.2E-30	597	697	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
LLLSFSSSSI VLQRNRNPMR GGSMAPTRKS RSVNKRISST NDSPEKDGVN PNKNKQRKKK 60 LTDKLGSQWS KEELERFYEA YRMYGKDWKK VAGVVRNRTT EMVEALYNMN RREKVQLSVS 120 KDQSHSIAAS DGCLSLLKKR RLDGMVPHAV GKRTPRVPVS YSYKKEYTEN YVSPYRRSLK 180 STTDANDDEV AHVVALALTE AAQRGGGSPQ VSQSPCRRAD QKPSPVLRWE RKQQLSETAR 240 AKLHNLSVDE ELLDGSIESR GADNGEYARD NSSLIDMEGT GTVEVLQKGG KFYRKKERVK 300 NVGNHQLDDG GEACSGTEEG LSCSLKEMVD IEVTNEKLEK FSPKGGRKRN KKLFFGDETP 360 ALNALQTLAD LSLMMPISTV DSESSIQLKG DRISADKDGK SALPEATLTS HKRHKLKHSV 420 VPEIEVSTSK KSKLGKESTK DTNVLSESKE QLPFADATWK RKRKSVVANA KLDSCPSGPL 480 KDEALDDEKK PVVKGKHGDQ VFTLPKQLKT VKSSESSLCI DQKETGPMAE IPLLNEVSLP 540 TKRSRRKMNL QRTFSAKEKS SDSILKSQAN KHSDLKEKLS SCLSSNMVRR WFIFEWFYSA 600 IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE WSVVRGSLGK PRRLSEHFLR DERQKLAEYR 660 ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV DYDKCRIQFD 720 RPELGVEFVM DIDCMPFNPL DNMPEALRRH IDDRKGSFMP IEPHINGNSH FGGCENHSSP 780 LKVHTSSSAL VMHGKATVAT MDNLCAQAGC VQPCKVTHHQ AREADIHALS ELKRALDKKE 840 TLLMELRSSN SDILENQNGI ECLNDSEVFK KHYATVSDAM LQLRQRNTYR GNSLPPWMKP 900 QTGFSVHDDL PSMLDGSLTQ EFGSTVVQII KGSRSRAHAM VDAAFKALTL TKEGEDGFVK 960 IGQALDSINH QQLASKSRLP VIRSQEQVNA NGSFYHVNNS TCSVSESITN DPSGAKLHNY 1020 SEKFDTELPS DLITSCVATL IMIQTCTERQ YPPADVAQIL DSAVSSLHPC CPQNLPIYRE 1080 IQMCMGRIKT QILALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

LLLSFSSSSI VLQRNRNPMR GGSMAPTRKS RSVNKRISST NDSPEKDGVN PNKNKQRKKK  60
LTDKLGSQWS KEELERFYEA YRMYGKDWKK VAGVVRNRTT EMVEALYNMN RREKVQLSVS  120
KDQSHSIAAS DGCLSLLKKR RLDGMVPHAV GKRTPRVPVS YSYKKEYTEN YVSPYRRSLK  180
STTDANDDEV AHVVALALTE AAQRGGGSPQ VSQSPCRRAD QKPSPVLRWE RKQQLSETAR  240
AKLHNLSVDE ELLDGSIESR GADNGEYARD NSSLIDMEGT GTVEVLQKGG KFYRKKERVK  300
NVGNHQLDDG GEACSGTEEG LSCSLKEMVD IEVTNEKLEK FSPKGGRKRN KKLFFGDETP  360
ALNALQTLAD LSLMMPISTV DSESSIQLKG DRISADKDGK SALPEATLTS HKRHKLKHSV  420
VPEIEVSTSK KSKLGKESTK DTNVLSESKE QLPFADATWK RKRKSVVANA KLDSCPSGPL  480
KDEALDDEKK PVVKGKHGDQ VFTLPKQLKT VKSSESSLCI DQKETGPMAE IPLLNEVSLP  540
TKRSRRKMNL QRTFSAKEKS SDSILKSQAN KHSDLKEKLS SCLSSNMVRR WFIFEWFYSA  600
IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE WSVVRGSLGK PRRLSEHFLR DERQKLAEYR  660
ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV DYDKCRIQFD  720
RPELGVEFVM DIDCMPFNPL DNMPEALRRH IDDRKGSFMP IEPHINGNSH FGGCENHSSP  780
LKVHTSSSAL VMHGKATVAT MDNLCAQAGC VQPCKVTHHQ AREADIHALS ELKRALDKKE  840
TLLMELRSSN SDILENQNGI ECLNDSEVFK KHYATVSDAM LQLRQRNTYR GNSLPPWMKP  900
QTGFSVHDDL PSMLDGSLTQ EFGSTVVQII KGSRSRAHAM VDAAFKALTL TKEGEDGFVK  960
IGQALDSINH QQLASKSRLP VIRSQEQVNA NGSFYHVNNS TCSVSESITN DPSGAKLHNY  1020
SEKFDTELPS DLITSCVATL IMIQTCTERQ YPPADVAQIL DSAVSSLHPC CPQNLPIYRE  1080
IQMCMGRIKT QILALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	352	GRKRNKKL
2	540	547	TKRSRRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g12780.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017439880.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X5
TrEMBL	A0A0L9VJY2	0.0	A0A0L9VJY2_PHAAN; Uncharacterized protein
STRING	XP_007144725.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]