PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g12780.2 | ||||||||
Common Name | LR48_Vigan10g089600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 1099aa MW: 123008 Da PI: 9.4038 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.9e-10 | 68 | 104 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a + +Rt +++ Vang06g12780.2 68 QWSKEELERFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 104 6*****************99.*********.***99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.19E-11 | 63 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.386 | 64 | 115 | IPR017884 | SANT domain |
SMART | SM00717 | 7.3E-6 | 65 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 68 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-8 | 68 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.74E-6 | 69 | 103 | No hit | No description |
SMART | SM01135 | 6.1E-52 | 597 | 698 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.2E-30 | 597 | 697 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1099 aa Download sequence Send to blast |
LLLSFSSSSI VLQRNRNPMR GGSMAPTRKS RSVNKRISST NDSPEKDGVN PNKNKQRKKK 60 LTDKLGSQWS KEELERFYEA YRMYGKDWKK VAGVVRNRTT EMVEALYNMN RREKVQLSVS 120 KDQSHSIAAS DGCLSLLKKR RLDGMVPHAV GKRTPRVPVS YSYKKEYTEN YVSPYRRSLK 180 STTDANDDEV AHVVALALTE AAQRGGGSPQ VSQSPCRRAD QKPSPVLRWE RKQQLSETAR 240 AKLHNLSVDE ELLDGSIESR GADNGEYARD NSSLIDMEGT GTVEVLQKGG KFYRKKERVK 300 NVGNHQLDDG GEACSGTEEG LSCSLKEMVD IEVTNEKLEK FSPKGGRKRN KKLFFGDETP 360 ALNALQTLAD LSLMMPISTV DSESSIQLKG DRISADKDGK SALPEATLTS HKRHKLKHSV 420 VPEIEVSTSK KSKLGKESTK DTNVLSESKE QLPFADATWK RKRKSVVANA KLDSCPSGPL 480 KDEALDDEKK PVVKGKHGDQ VFTLPKQLKT VKSSESSLCI DQKETGPMAE IPLLNEVSLP 540 TKRSRRKMNL QRTFSAKEKS SDSILKSQAN KHSDLKEKLS SCLSSNMVRR WFIFEWFYSA 600 IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE WSVVRGSLGK PRRLSEHFLR DERQKLAEYR 660 ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ RVIAIHPKTR EIHDGSVLTV DYDKCRIQFD 720 RPELGVEFVM DIDCMPFNPL DNMPEALRRH IDDRKGSFMP IEPHINGNSH FGGCENHSSP 780 LKVHTSSSAL VMHGKATVAT MDNLCAQAGC VQPCKVTHHQ AREADIHALS ELKRALDKKE 840 TLLMELRSSN SDILENQNGI ECLNDSEVFK KHYATVSDAM LQLRQRNTYR GNSLPPWMKP 900 QTGFSVHDDL PSMLDGSLTQ EFGSTVVQII KGSRSRAHAM VDAAFKALTL TKEGEDGFVK 960 IGQALDSINH QQLASKSRLP VIRSQEQVNA NGSFYHVNNS TCSVSESITN DPSGAKLHNY 1020 SEKFDTELPS DLITSCVATL IMIQTCTERQ YPPADVAQIL DSAVSSLHPC CPQNLPIYRE 1080 IQMCMGRIKT QILALIPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 345 | 352 | GRKRNKKL |
2 | 540 | 547 | TKRSRRKM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g12780.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017439880.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 2 isoform X5 | ||||
TrEMBL | A0A0L9VJY2 | 0.0 | A0A0L9VJY2_PHAAN; Uncharacterized protein | ||||
STRING | XP_007144725.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Publications ? help Back to Top | |||
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