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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Vang06g08880.1 |
Common Name | LR48_Vigan588s000600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family |
NAC |
Protein Properties |
Length: 463aa MW: 51707.9 Da PI: 7.1123 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Vang06g08880.1 | genome | SNU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.9 | 1.9e-53 | 32 | 159 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
l+pGfrFhPtdeelv +yLk+kv+gk++++ ++i+evdiy++ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg+d++v+
Vang06g08880.1 32 LAPGFRFHPTDEELVIYYLKRKVSGKSFRF-DAISEVDIYRSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVK 125
579**************************9.99**************75348899999************************************* PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++vglkktLvf++grap+g++t+Wvmheyrl
Vang06g08880.1 126 H-DQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRL 159
*.999****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009555 | Biological Process | pollen development |
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MGRETVFLPA PPTTTTTIVN PVAAPAAPPT SLAPGFRFHP TDEELVIYYL KRKVSGKSFR 60 FDAISEVDIY RSEPWDLADK SRLKTRDQEW YFFSALDKKY GNGGRMNRAT NKGYWKATGN 120 DRPVKHDQRT VGLKKTLVFH SGRAPDGKRT NWVMHEYRLV DEELERAGTG SSQPQDAYVL 180 CRVFHKNNIG PPNGQRYAPF VEEEWDDASG MVPGAEPVHN GSIAHQPRVE GNNGVLFAEG 240 RNGVLQDTQS INKTPFDVNK LPIETQNLLA VCKRESMAEY PSPEKDDNNC KQVDEYPSPQ 300 TDNPKPFSLI YKRRRHNLNS NHSNVSGDSI RTGQDPCSST ITTAATTLPT TTAGAETTNS 360 APKKHFLSAL VEFSLQESLE SKESLALIKA PDFDAENLES SMSPSSAKFI KNLQNEIHKL 420 AVEKETMRFE MMSAQAMINI LQSRVDVLSK ENEDLKRMTQ NP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 31 | 188 | 19 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Publications
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- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis. Plant J., 2011. 65(3): p. 492-502 [PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Yang K, et al.
Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation. Plant J., 2017. 90(3): p. 505-519 [PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression. Plant Cell, 1998. 10(10): p. 1747-58 [PMID:9761800]
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