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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang06g07800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 368aa MW: 38789.7 Da PI: 6.7964 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 161 | 210 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Vang06g07800.1 161 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 210 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-38 | 161 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.0E-33 | 161 | 219 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 161 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 161 | 218 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 161 | 219 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.1E-12 | 162 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.94E-15 | 169 | 220 | No hit | No description |
PRINTS | PR00367 | 9.1E-12 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEEASPCTCR PPVERIINSI GSHVCITVAH RRPSASGSAS GNFAADPGGQ EDPEEPFTPR 60 DVQVQGGTVG SVPTHVVSPS SSAQTNTKWV PASGFPMLPR FMHAPSPGLS SSPGPPLLGS 120 GSVGQKRTRE DDTAAAASGG EGEGGSSRSA SQEESGERRR RYRGVRQRPW GKWAAEIRDP 180 HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN VTAVRPPHLP DFPATSLSGS 240 GDVPAVTGYS PTVMQGAPLQ SSPDLLRDYW GYSQLLRSTG EFHGLDQWFY DSQMAALQSS 300 SSSLLPLPPA YAPSSASFPL FSSQQMGAFR PPGQQHHGGG DSGNGSEFPP SSWSDTSSYP 360 PPPPPPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-22 | 162 | 222 | 6 | 67 | ATERF1 |
3gcc_A | 2e-22 | 162 | 222 | 6 | 67 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 161 | ERRRRY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang06g07800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413598.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_017413600.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_017413601.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_017413602.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_017413603.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0S3SNJ9 | 0.0 | A0A0S3SNJ9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007143561.1 | 1e-109 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 1e-21 | related to AP2 6 |