PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g03430.1

Common Name

LR48_Vigan02g266100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 221aa MW: 24693.3 Da PI: 7.5525

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g03430.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.5	4.1e-22	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vang06g03430.1 33 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 93 89***************99************************************97 PP
2	Wus_type_Homeobox	102.6	2.7e-33	32	94	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k Vang06g03430.1 32 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 94 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.0E-18	27	96	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	29	94	IPR001356	Homeobox domain
SMART	SM00389	8.8E-16	31	98	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-19	31	95	IPR009057	Homeodomain-like
Pfam	PF00046	5.9E-20	33	93	IPR001356	Homeobox domain
CDD	cd00086	9.98E-16	33	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSMSTPTENS WVRLGNLYCD PLLTSGGHKI TSRQRWTPTP VQLQILERIF DQGNGTPSKE 60 KIKEITAELG QHGQISETNV YNWFQNRRAR SKRKLQNVAP GNTESEVDTE VDSKDKKTKP 120 EEFLSQHNIT TSGGSEKLCF QNPQVYSDLQ YLNTDSNKPY SMFPSDGSLK STRNLTHVSV 180 FNQVLSNSRS EYAGGKMEVG GTVSYNLFHQ TGDCNLGSDF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g03430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413979.1	1e-156	PREDICTED: WUSCHEL-related homeobox 8-like isoform X1
Swissprot	Q5QMM3	1e-54	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0L9U178	1e-155	A0A0L9U178_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SL91	1e-155	A0A0S3SL91_PHAAN; Uncharacterized protein
STRING	XP_007142723.1	1e-136	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-53	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]