PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang06g03430.1 | ||||||||
Common Name | LR48_Vigan02g266100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 221aa MW: 24693.3 Da PI: 7.5525 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.5 | 4.1e-22 | 33 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l +++e++V++WFqNrRa+ k+ Vang06g03430.1 33 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 93 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 102.6 | 2.7e-33 | 32 | 94 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtPtp Q++iLe+++++G tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR+++k Vang06g03430.1 32 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRK 94 789***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-18 | 27 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 29 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.8E-16 | 31 | 98 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.75E-19 | 31 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.9E-20 | 33 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.98E-16 | 33 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MSMSTPTENS WVRLGNLYCD PLLTSGGHKI TSRQRWTPTP VQLQILERIF DQGNGTPSKE 60 KIKEITAELG QHGQISETNV YNWFQNRRAR SKRKLQNVAP GNTESEVDTE VDSKDKKTKP 120 EEFLSQHNIT TSGGSEKLCF QNPQVYSDLQ YLNTDSNKPY SMFPSDGSLK STRNLTHVSV 180 FNQVLSNSRS EYAGGKMEVG GTVSYNLFHQ TGDCNLGSDF * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang06g03430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017413979.1 | 1e-156 | PREDICTED: WUSCHEL-related homeobox 8-like isoform X1 | ||||
Swissprot | Q5QMM3 | 1e-54 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A0L9U178 | 1e-155 | A0A0L9U178_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SL91 | 1e-155 | A0A0S3SL91_PHAAN; Uncharacterized protein | ||||
STRING | XP_007142723.1 | 1e-136 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-53 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|