PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 200aa MW: 22846.2 Da PI: 8.7917

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0613s00070.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.1	3.9e-07	38	57	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Vang0613s00070.1 38 FPCPVCSKTFNRYNNLQMHM 57 89*****************9 PP
2	zf-C2H2	14.4	0.00011	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +C+k F k + ++H +++ Vang0613s00070.1 122 YMCRKCSKAFAVKGDWRTHEKNC 144 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.73E-6	34	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-7	38	57	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.616	38	65	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-5	38	57	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	38	60	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.37E-6	105	142	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	118	142	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	59	122	142	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MGEKEEVNII SEHPLDRLNK GQYWIPTPSQ ILIGPTQFPC PVCSKTFNRY NNLQMHMWGH 60 GSQYRKGPDS LKGTQPTAML RLPCFCCAAG CKHNIDHPRA RPLKDFRTLQ THYKRKHGIK 120 PYMCRKCSKA FAVKGDWRTH EKNCGKIWYC LCGSDFKHKR SLKDHIKAFG YGHGAFGIDC 180 LQEEDEAASE IEHDGEHSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0613s00070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014493526.1	1e-152	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-118	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A1S3TIE3	1e-151	A0A1S3TIE3_VIGRR; zinc finger protein WIP2-like
STRING	XP_007133835.1	1e-145	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]