PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g03540.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 242aa MW: 27441.3 Da PI: 6.9488

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g03540.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.3e-21	106	166	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++ +l +++e++V++WFqNrRa+ k+ Vang05g03540.1 106 RQRWTPTPLQLQILERIFDEgNGTPSKQKIKDITIELgqhgQISETNVYNWFQNRRARSKR 166 89***************99************************************97 PP
2	Wus_type_Homeobox	100.1	1.7e-32	105	168	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL ++G+i+++NV++WFQNr+aR+++kq Vang05g03540.1 105 ARQRWTPTPLQLQILERIFDEGNGTPSKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQ 168 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.657	102	167	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-16	102	168	IPR009057	Homeodomain-like
SMART	SM00389	9.2E-15	104	171	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.51E-18	105	168	IPR009057	Homeodomain-like
Pfam	PF00046	5.4E-19	106	166	IPR001356	Homeobox domain
CDD	cd00086	1.78E-14	106	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSPQNAIQSE TKLSHFLVSA KKKEKEMEAE HHQEASIAIG SLYVKVMTDE QMELLRQQIS 60 VYATICEQLV EMHKAITTQQ DLAGLRLGNL YCDPLMACSG HKITARQRWT PTPLQLQILE 120 RIFDEGNGTP SKQKIKDITI ELGQHGQISE TNVYNWFQNR RARSKRKQLA PAPNVAEPET 180 ETEIDSPREK KIRAESVQVA QPFENSSPHR IKDMYIHSPD LGFEQLMSKI DVAGCYGSYF 240 L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	167	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g03540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017435801.1	0.0	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-79	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0S3RAI8	0.0	A0A0S3RAI8_PHAAN; Uncharacterized protein
STRING	XP_007136031.1	1e-147	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	8e-75	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]