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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang04g02420.1 | ||||||||
Common Name | LR48_Vigan03g007300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 277aa MW: 30448 Da PI: 8.4754 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.5 | 6.6e-40 | 98 | 202 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+ +++s+ + ++ + Vang04g02420.1 98 TAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfSSSSDDVDGGV---Prdddfnv 189 78**************************************************************66655333222222222221...12223444 PP TCP 89 ............k 89 + Vang04g02420.1 190 ieesivikrklkH 202 4444444433330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-37 | 98 | 180 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.401 | 100 | 158 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MFPSSNYTSS GSYPRFPSSS SSAAPYPSFT FLHPENSSAS TTFLHDPLSV TFIPTNYHAP 60 IPETLANWAV ADCAAAAMLN QDLGGALYGI TKKPAKKTAK KDRHSKIHTS QGLRDRRVRL 120 SIEIARKFFD LQDMLGFDKA SNTLDWLFTK SKKAIKELTR SKHSADSFEF SSSSDDVDGG 180 VPRDDDFNVI EESIVIKRKL KHSLMSSIHH QNAVIPKEAS VNNSDYHSFP NLSPNWEANN 240 AANGRSTFCA IASMNLSAGL QIFGKSWEEC TNPHPT* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang04g02420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022635787.1 | 2e-88 | transcription factor CYCLOIDEA-like isoform X2 | ||||
TrEMBL | A0A3Q0F078 | 6e-87 | A0A3Q0F078_VIGRR; transcription factor CYCLOIDEA-like isoform X2 | ||||
STRING | GLYMA08G28691.1 | 3e-79 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-27 | TCP family protein |
Publications ? help Back to Top | |||
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