PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g01660.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 310aa    MW: 35060.1 Da    PI: 5.8754
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g01660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.73e-21127187257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + + +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Vang04g01660.1 127 RQRWTPTAMQLQILERIFDQgTGTPSKEKIKEITAELsqhgQISETNVYNWFQNRRARSKR 187
                     89*****************99**************************************97 PP
2Wus_type_Homeobox1041e-33126189265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++itaeL+++G+i+++NV++WFQNr+aR+++kq
     Vang04g01660.1 126 SRQRWTPTAMQLQILERIFDQGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 189
                        689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-17121191IPR009057Homeodomain-like
PROSITE profilePS5007114.965123188IPR001356Homeobox domain
SuperFamilySSF466892.69E-18125190IPR009057Homeodomain-like
SMARTSM003892.4E-14125192IPR001356Homeobox domain
PfamPF000464.7E-19127187IPR001356Homeobox domain
CDDcd000862.24E-13127189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
LGHSCFLFSP RIVRRRHSFE FWQVLTYASD TKATLSAPIE KAMVNVMEWQ KQSWQPNGNA  60
EMMYVKVMTD EQLETLRKQI AVYATICEQL IEMHKTISSH QDLAGIRLGN MYCDPLLGSS  120
GHKIASRQRW TPTAMQLQIL ERIFDQGTGT PSKEKIKEIT AELSQHGQIS ETNVYNWFQN  180
RRARSKRKQQ NVAPGVNAES EVETEVDSKD KKTKADDFWS QLNVSAGPSD NLGFQNHDDL  240
QYLNDNSESN KPDSVFPSDG SLRSTRNFNH VPVFDGLLSN PGNGYLTGKI EAPENYDLYQ  300
PSDDFDMAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00617PBMTransfer from AT4G35550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g01660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430811.10.0PREDICTED: WUSCHEL-related homeobox 8-like isoform X1
SwissprotO817882e-77WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0L9UWK50.0A0A0L9UWK5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RRA00.0A0A0S3RRA0_PHAAN; Uncharacterized protein
STRINGXP_007139251.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-80WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]