PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang02g00260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 22465.3 Da PI: 5.6568 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed l ++ +++G+ +W + +++ g++R++k+c++rw++yl Vang02g00260.1 14 KGPWSPDEDVTLRNYLEKHGTAgNWIALPKKAGLKRCGKSCRLRWLNYL 62 79******************99*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.727 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.38E-17 | 15 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.54E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.205 | 63 | 96 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-5 | 66 | 89 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MGRAPCCDKS IVKKGPWSPD EDVTLRNYLE KHGTAGNWIA LPKKAGLKRC GKSCRLRWLN 60 YLRPHIKLGG FTEEEDKIIC TLYGNIGSRQ KLNSAWFDSY NNLNLEQTPI SVPLPMPQEL 120 VSFNYSAPPS NEISLPTFNA ASLAQQNEDI QWFGYDYAEE NDPNLLAFVL DDLLMNHGSA 180 SSDHIASSCV ANQDSFYSSK A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang02g00260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152944.1 | 5e-92 | hypothetical protein PHAVU_004G173500g | ||||
TrEMBL | V7C6D8 | 1e-90 | V7C6D8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152944.1 | 2e-91 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-49 | myb domain protein 36 |