PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g19410.4
Common NameLR48_Vigan01g330800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 137aa    MW: 15237.3 Da    PI: 11.3169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g19410.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-163070345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++Tt Ed ++++a+ +lG++ W++Iar ++ gRt++ +k++w+
   Vang01g19410.4 30 PFTTREDAIILHAHDRLGNK-WAAIARLLP-GRTDNAVKNHWN 70
                     89******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.476122IPR017930Myb domain
SuperFamilySSF466892.33E-24277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-10235IPR009057Homeodomain-like
PROSITE profilePS5129421.9562377IPR017930Myb domain
SMARTSM007175.5E-132775IPR001005SANT/Myb domain
PfamPF002491.0E-133070IPR001005SANT/Myb domain
CDDcd001673.38E-103073No hitNo description
Gene3DG3DSA:1.10.10.601.2E-183674IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
LISLHVKGRS GKSCRLRWCN QLSPTVEHRP FTTREDAIIL HAHDRLGNKW AAIARLLPGR  60
TDNAVKNHWN ATLKRRASQR RRFGDDPLTA LTLAPPGSGG GGWTGGFRDV VAREVREYVS  120
FSFSDKLGSN EKLSKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2917832109B-MYB
1gv2_A3e-2917729105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g19410.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433979.18e-97PREDICTED: transcription factor MYB44-like
SwissprotO231609e-35MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0L9TTL02e-95A0A0L9TTL0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RQ432e-95A0A0S3RQ43_PHAAN; Uncharacterized protein
STRINGGLYMA17G36370.25e-65(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-37myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]