PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang01g00220.1 | ||||||||
Common Name | LR48_Vigan03g137300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 203aa MW: 23173.9 Da PI: 8.2203 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ r+psa+++++++++l +++ ++V++WFqN++a++++ Vang01g00220.1 7 SRWSPTTEQLMILEELYRSgIRTPSASQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 118.2 | 3.6e-38 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+eQ++iLeely+sG+rtP++++iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk Vang01g00220.1 6 SSRWSPTTEQLMILEELYRSGIRTPSASQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.592 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-4 | 4 | 71 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-18 | 7 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-8 | 7 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.49E-4 | 8 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSPAGSSRWS PTTEQLMILE ELYRSGIRTP SASQIQQITT HLSFYGRIEG KNVFYWFQNH 60 KARDRQKLRR KLTKQLQLQQ QQLQLHHCQL TPDITNHFFA YSPSSSTQDF PFYNPPTFLF 120 QGGSSNTSEQ ALNCAWNVHN LQSNLVARED VTFYNNGWST PVDVNNQPSS CCTSRPLKTL 180 DLFPLTTTRT DEDCTAPPPK EL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang01g00220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017417967.1 | 1e-150 | PREDICTED: WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A0L9U5F4 | 1e-149 | A0A0L9U5F4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3RV62 | 1e-149 | A0A0S3RV62_PHAAN; Uncharacterized protein | ||||
STRING | XP_007140303.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 9e-36 | WOX family protein |
Publications ? help Back to Top | |||
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