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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0063ss00440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 107aa MW: 12470.5 Da PI: 9.718 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.6 | 1.5e-11 | 6 | 63 | 5 | 57 |
SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++tkeql +L +l+ r p++e+ ++A+kl ++ + V+ WFqN ++e++ Vang0063ss00440.1 6 WKPTKEQLSILVTLYDYgIRSPTKEQVYDIATKLrsygEIRDFSVYCWFQNYGYRERQ 63 99**************88*********************************9999986 PP | |||||||
2 | Wus_type_Homeobox | 74.5 | 1.6e-24 | 5 | 64 | 5 | 64 |
Wus_type_Homeobox 5 RWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 W Pt+eQ+ iL +ly+ G+r+P+ke++ +i+++L++yG+i+d V+ WFQN Rerq+ Vang0063ss00440.1 5 CWKPTKEQLSILVTLYDYGIRSPTKEQVYDIATKLRSYGEIRDFSVYCWFQNYGYRERQR 64 6*********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 4.7E-9 | 6 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-4 | 6 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.98E-7 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.633 | 9 | 64 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
LAYKCWKPTK EQLSILVTLY DYGIRSPTKE QVYDIATKLR SYGEIRDFSV YCWFQNYGYR 60 ERQRSLKQGT GATSLPPFIN SKLFLNISLV LLQLFIFNIP NSYLII* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0063ss00440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-180 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420310.1 | 3e-32 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
TrEMBL | A0A0L9UEF2 | 6e-31 | A0A0L9UEF2_PHAAN; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-16 | WUSCHEL related homeobox 2 |